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contig_metadata

23 rows where analysis = "diamond", bioproject = "PRJNA1132896" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 23 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1132896 · 23 ✖

analysis 1

  • diamond · 23 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5386795 5386795 PRJNA1132896_P_NODE_1105_length_494_cov_1.736342_g1014_i0 PRJNA1132896 1105 494 1.736342 8.57752948 Opisthokonta 33154 Chordata Chordata 220 8.57e-67   NR XP_027306665.2 8839 g1014 i0 67.1 72.0971659919028 164 53 99.6 1 493 2 292 454 XP_027306665.2 60S ribosomal protein L3 [Anas platyrhynchos] diamond 35616 221 0.995475113122172 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Anas Anas platyrhynchos
8684851 8684851 PRJNA1132896_P_NODE_3587_length_299_cov_2.300885_g3496_i0 PRJNA1132896 3587 299 2.300885 6.87964615 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 146 2.02e-40   NR NP_001085326.1 8355 g3496 i0 74 11.0167224080268 100 24 99.3 2 1 297 37 135 NP_001085326.1 malate dehydrogenase 2 S homeolog [Xenopus laevis] diamond 3294 147 0.993197278911565 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
13037339 13037339 PRJNA1132896_P_NODE_471_length_760_cov_1.588064_g386_i0 PRJNA1132896 471 760 1.588064 12.0692864 Metazoa 33208 Chordata Chordata 326 4.0799999999999978e-106   NR KAK9400253.1 8729 g386 i0 62.8 73.2039473684211 250 93 98.7 0 3 752 63 312 KAK9400253.1 rab GDP dissociation inhibitor beta [Crotalus adamanteus] diamond 55635 326 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Viperidae Crotalus Crotalus adamanteus
14312545 14312545 PRJNA1132896_P_NODE_3792_length_292_cov_2.045662_g3701_i0 PRJNA1132896 3792 292 2.045662 5.97333304 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 141 2.88e-38   NR XP_032830315.1 7757 g3701 i0 76.8 20.958904109589 82 18 83.2 1 3 245 71 152 XP_032830315.1 actin-related protein 2/3 complex subunit 1A-like [Petromyzon marinus] diamond 6120 142 0.992957746478873 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Petromyzon Petromyzon marinus
15059458 15059458 PRJNA1132896_P_NODE_2572_length_344_cov_1.416974_g2481_i0 PRJNA1132896 2572 344 1.416974 4.87439056 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 153 1.91e-44   NR XP_043940687.1 7888 g2481 i0 68.9 4.55232558139535 103 32 89.8 0 29 337 6 108 XP_043940687.1 peroxiredoxin-2 [Protopterus annectens] diamond 1566 154 0.993506493506494 Eukaryota Opisthokonta Metazoa Chordata   Ceratodontiformes Protopteridae Protopterus Protopterus annectens
18135367 18135367 PRJNA1132896_P_NODE_2455_length_350_cov_4.223827_g2364_i0 PRJNA1132896 2455 350 4.223827 14.7833945 Opisthokonta 33154 Chordata Chordata 215 1.6e-69   NR XP_019621907.1 7741 g2364 i0 87 38.3657142857143 115 15 98.6 0 347 3 1 115 XP_019621907.1 PREDICTED: peptidyl-prolyl cis-trans isomerase-like [Branchiostoma belcheri] diamond 13428 217 0.990783410138249 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
27196574 27196574 PRJNA1132896_P_NODE_2182_length_368_cov_1.044068_g2091_i0 PRJNA1132896 2182 368 1.044068 3.84217024 Ranitomeya imitator 111125 Chordata Chordata 69.7 4.74e-11   NR CAJ0964204.1 111125 g2091 i0 73 0.91304347826087 37 10 30.2 0 233 123 15 51 CAJ0964204.1 unnamed protein product [Ranitomeya imitator] diamond 336 69.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
27765500 27765500 PRJNA1132896_P_NODE_3684_length_296_cov_1.726457_g3593_i0 PRJNA1132896 3684 296 1.726457 5.11031272 Pseudophryne corroboree 495146 Chordata Chordata 69.7 5e-12   NR XP_063814617.1 495146 g3593 i0 46.1 0.77027027027027 76 37 73 2 271 56 3 78 XP_063814617.1 glutathione S-transferase P 1-like [Pseudophryne corroboree] diamond 228 69.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Myobatrachidae Pseudophryne Pseudophryne corroboree
28554828 28554828 PRJNA1132896_P_NODE_5767_length_264_cov_1.000000_g5676_i0 PRJNA1132896 5767 264 1 2.64 Spea bombifrons 233779 Chordata Chordata 57 4.69e-7   NR XP_053318521.1 233779 g5676 i0 50.8 14.2727272727273 59 27 64.8 1 3 173 1397 1455 XP_053318521.1 leucine-rich repeat serine/threonine-protein kinase 2 isoform X2 [Spea bombifrons] diamond 3768 57 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pelobatidae Spea Spea bombifrons
28733283 28733283 PRJNA1132896_P_NODE_7307_length_250_cov_0.870056_g7216_i0 PRJNA1132896 7307 250 0.870056 2.17514 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 60.5 2.26e-8   NR XP_015676811.1 103944 g7216 i0 43.3 2.328 67 38 80.4 0 41 241 8 74 XP_015676811.1 importin-4, partial [Protobothrops mucrosquamatus] diamond 582 60.5 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Viperidae Protobothrops Protobothrops mucrosquamatus
29049044 29049044 PRJNA1132896_P_NODE_5128_length_273_cov_1.375000_g5037_i0 PRJNA1132896 5128 273 1.375 3.75375 Aves 8782 Chordata Chordata 77 5.73e-15   NR KAI6078827.1 8832 g5037 i0 57.1 6.94505494505495 70 29 76.9 1 265 56 81 149 KAI6078827.1 Calmodulin, striated muscle [Aix galericulata] diamond 1896 77.4 0.994832041343669 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Aix Aix galericulata
29690973 29690973 PRJNA1132896_P_NODE_10170_length_241_cov_0.916667_g10079_i0 PRJNA1132896 10170 241 0.916667 2.20916747 Pristis pectinata 685728 Chordata Chordata 56.6 4.42e-7   NR XP_051885610.1 685728 g10079 i0 41.7 1.85477178423237 72 42 89.6 0 21 236 312 383 XP_051885610.1 rho GTPase-activating protein 1 [Pristis pectinata] diamond 447 56.6 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Rhinopristiformes Pristidae Pristis Pristis pectinata
29817456 29817456 PRJNA1132896_P_NODE_6311_length_256_cov_1.677596_g6220_i0 PRJNA1132896 6311 256 1.677596 4.29464576 Styela clava 7725 Chordata Chordata 75.9 9.41e-14   NR XP_039248804.1 7725 g6220 i0 58.3 1.40625 60 24 69.1 1 78 254 363 422 XP_039248804.1 hephaestin-like protein [Styela clava] diamond 360 75.9 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
30228229 30228229 PRJNA1132896_P_NODE_10092_length_241_cov_1.375000_g10001_i0 PRJNA1132896 10092 241 1.375 3.31375 Pitangus sulphuratus 371930 Chordata Chordata 53.9 4.22e-6   NR KAJ7422224.1 371930 g10001 i0 44.1 0.734439834024896 59 31 73.4 1 193 17 56 112 KAJ7422224.1 hypothetical protein BTVI_15104 [Pitangus sulphuratus] diamond 177 53.9 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Tyrannidae Pitangus Pitangus sulphuratus
30228233 30228233 PRJNA1132896_P_NODE_5592_length_266_cov_1.595855_g5501_i0 PRJNA1132896 5592 266 1.595855 4.2449743 Lerista edwardsae 470340 Chordata Chordata 49.7 1.19e-4   NR KAJ6663434.1 470340 g5501 i0 37.3 1.91729323308271 67 40 73.3 1 46 240 141 207 KAJ6663434.1 hypothetical protein lerEdw1_009513 [Lerista edwardsae] diamond 510 49.7 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Scincidae Lerista Lerista edwardsae
30849275 30849275 PRJNA1132896_P_NODE_1774_length_402_cov_2.559271_g1683_i0 PRJNA1132896 1774 402 2.559271 10.28826942 Branchiostoma 7737 Chordata Chordata 161 3.69e-48   NR XP_035667477.1 7739 g1683 i0 68.7 60.8582089552239 115 36 85.8 0 402 58 4 118 XP_035667477.1 40S ribosomal protein S17 [Branchiostoma floridae] diamond 24465 161 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
31355099 31355099 PRJNA1132896_P_NODE_4636_length_280_cov_1.454106_g4545_i0 PRJNA1132896 4636 280 1.454106 4.0714968 Aves 8782 Chordata Chordata 104 1.35e-23   NR KAI6066677.1 8832 g4545 i0 50.5 51.8142857142857 93 46 99.6 0 279 1 1255 1347 KAI6066677.1 RNA helicase [Aix galericulata] diamond 14508 104 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Aix Aix galericulata
31587488 31587488 PRJNA1132896_P_NODE_9836_length_242_cov_0.911243_g9745_i0 PRJNA1132896 9836 242 0.911243 2.20520806 Branchiostoma belcheri 7741 Chordata Chordata 62 6.03e-9   NR KAI8478031.1 7741 g9745 i0 50 2.55371900826446 68 30 84.3 2 37 240 66 129 KAI8478031.1 Histone acetyltransferase kat7 [Branchiostoma belcheri] diamond 618 62 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
31618934 31618934 PRJNA1132896_P_NODE_9316_length_244_cov_0.900585_g9225_i0 PRJNA1132896 9316 244 0.900585 2.1974274 Ranitomeya imitator 111125 Chordata Chordata 42.4 0.0466   NR CAJ0956274.1 111125 g9225 i0 48.5 0.897540983606557 33 17 40.6 0 101 3 1 33 CAJ0956274.1 unnamed protein product [Ranitomeya imitator] diamond 219 42.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
31745361 31745361 PRJNA1132896_P_NODE_4817_length_277_cov_3.343137_g4726_i0 PRJNA1132896 4817 277 3.343137 9.26048949 Oikopleura dioica 34765 Chordata Chordata 75.9 5.12e-15   NR CAG5109510.1 34765 g4726 i0 57.1 4.05054151624549 63 27 68.2 0 195 7 13 75 CAG5109510.1 Oidioi.mRNA.OKI2018_I69.chr2.g4037.t1.cds [Oikopleura dioica] diamond 1122 75.9 1 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica
32283610 32283610 PRJNA1132896_P_NODE_7699_length_248_cov_1.720000_g7608_i0 PRJNA1132896 7699 248 1.72 4.2656 Petromyzon marinus 7757 Chordata Chordata 98.6 8.63e-22   NR XP_032806199.1 7757 g7608 i0 54.9 5.6008064516129 82 36 98 1 245 3 242 323 XP_032806199.1 WD repeat-containing protein 1-A-like [Petromyzon marinus] diamond 1389 98.6 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Petromyzon Petromyzon marinus
32430663 32430663 PRJNA1132896_P_NODE_1779_length_402_cov_1.592705_g1688_i0 PRJNA1132896 1779 402 1.592705 6.4026741 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 101 2.4e-24   NR OCT92450.1 8355 g1688 i0 57.9 17.5970149253731 76 32 56.7 0 262 35 71 146 OCT92450.1 hypothetical protein XELAEV_18015505mg [Xenopus laevis] diamond 7074 101 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
32662340 32662340 PRJNA1132896_P_NODE_7840_length_248_cov_0.880000_g7749_i0 PRJNA1132896 7840 248 0.88 2.1824 Xenopus laevis 8355 Chordata Chordata 44.7 0.0083   NR XP_041433230.1 8355 g7749 i0 38.9 1.75403225806452 72 44 87.1 0 24 239 21 92 XP_041433230.1 uncharacterized protein LOC121398283 [Xenopus laevis] diamond 435 44.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;