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contig_metadata

34 rows where analysis = "diamond", bioproject = "PRJNA1132896" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 34 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1132896 · 34 ✖

analysis 1

  • diamond · 34 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3582274 3582274 PRJNA1132896_P_NODE_5663_length_265_cov_1.562500_g5572_i0 PRJNA1132896 5663 265 1.5625 4.140625 Candidatus Planktophila sp. 2175601 Bacteria Bacteria 165 3.6799999999999996e-47   NR MBP7903097.1 2175601 g5572 i0 89.8 1.99245283018868 88 9 99.6 0 2 265 177 264 MBP7903097.1 histidine--tRNA ligase [Candidatus Planktophila sp.] diamond 528 165 1 Bacteria   Bacillati Actinomycetota Actinomycetes Candidatus Nanopelagicales Candidatus Nanopelagicaceae Candidatus Planktophila Candidatus Planktophila sp.
6661496 6661496 PRJNA1132896_P_NODE_5126_length_273_cov_1.395000_g5035_i0 PRJNA1132896 5126 273 1.395 3.80835 Bifidobacteriaceae 31953 Bacteria Bacteria 135 1.98e-36   NR MCT6899561.1 41200 g5035 i0 79.5 6 78 16 85.7 0 3 236 196 273 MCT6899561.1 family 43 glycosylhydrolase [Bifidobacterium sp.] diamond 1638 135 1 Bacteria   Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium sp.
13037332 13037332 PRJNA1132896_P_NODE_4191_length_286_cov_1.446009_g4100_i0 PRJNA1132896 4191 286 1.446009 4.13558574 Kocuria 57493 Bacteria Bacteria 129 5.78e-37   NR WP_303381425.1 57493 g4100 i0 100 0.702797202797203 67 0 70.3 0 1 201 21 87 WP_303381425.1 MULTISPECIES: preprotein translocase subunit SecE [Kocuria] diamond 201 129 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria  
16860806 16860806 PRJNA1132896_P_NODE_3334_length_309_cov_1.957627_g3243_i0 PRJNA1132896 3334 309 1.957627 6.04906743 Solirubrobacteraceae bacterium 2586742 Bacteria Bacteria 167 2.25e-47   NR MBX5442578.1 2586742 g3243 i0 75.7 10 103 25 100 0 309 1 276 378 MBX5442578.1 adenosylhomocysteinase [Solirubrobacteraceae bacterium] diamond 3090 167 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales Solirubrobacteraceae   Solirubrobacteraceae bacterium
20685026 20685026 PRJNA1132896_P_NODE_5677_length_265_cov_1.270833_g5586_i0 PRJNA1132896 5677 265 1.270833 3.36770745 Eggerthellaceae bacterium 3-80 3142743 Bacteria Bacteria 175 3.64e-49   NR MEY8562709.1 3142743 g5586 i0 97.7 1.99245283018868 88 2 99.6 0 265 2 133 220 MEY8562709.1 formate dehydrogenase subunit alpha [Eggerthellaceae bacterium 3-80] diamond 528 175 1 Bacteria   Bacillati Actinomycetota Coriobacteriia Eggerthellales Eggerthellaceae   Eggerthellaceae bacterium 3-80
22708632 22708632 PRJNA1132896_P_NODE_7598_length_249_cov_0.875000_g7507_i0 PRJNA1132896 7598 249 0.875 2.17875 Dietzia timorensis 499555 Bacteria Bacteria 146 7.12e-40   NR WP_156515207.1 499555 g7507 i0 86.6 0.987951807228916 82 11 98.8 0 3 248 90 171 WP_156515207.1 hemolysin family protein [Dietzia timorensis] diamond 246 146 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Dietziaceae Dietzia Dietzia timorensis
26690469 26690469 PRJNA1132896_P_NODE_7721_length_248_cov_1.600000_g7630_i0 PRJNA1132896 7721 248 1.6 3.968 Acidimicrobiia bacterium 2080302 Bacteria Bacteria 75.1 1.13e-14   NR HEX6286777.1 2080302 g7630 i0 49.4 1.86290322580645 77 37 93.1 1 4 234 23 97 HEX6286777.1 O-acetyl-ADP-ribose deacetylase [Acidimicrobiia bacterium] diamond 462 75.1 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium
26869840 26869840 PRJNA1132896_P_NODE_7501_length_249_cov_0.875000_g7410_i0 PRJNA1132896 7501 249 0.875 2.17875 root 1 Root_unresolved Root_unresolved 44.7 0.00823   NR HEX2360277.1 1909295 g7410 i0 27.1 2.31325301204819 107 46 91.6 2 249 22 43 148 HEX2360277.1 molecular chaperone DnaJ [Solirubrobacterales bacterium] diamond 576 45.1 0.991130820399113 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales     Solirubrobacterales bacterium
27164991 27164991 PRJNA1132896_P_NODE_7362_length_249_cov_1.750000_g7271_i0 PRJNA1132896 7362 249 1.75 4.3575 Actinomycetes bacterium 1883427 Bacteria Bacteria 86.3 8.87e-18   NR MCU1457133.1 1883427 g7271 i0 52.6 1.83132530120482 76 36 91.6 0 249 22 2 77 MCU1457133.1 FAD-dependent oxidoreductase [Actinomycetes bacterium] diamond 456 86.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes       Actinomycetes bacterium
27375838 27375838 PRJNA1132896_P_NODE_1303_length_458_cov_1.200000_g1212_i0 PRJNA1132896 1303 458 1.2 5.496 FCB group 1783270 Bacteria Bacteria 81.6 5.72e-16   NR HEX9094039.1 2052159 g1212 i0 34.5 1.82751091703057 142 85 92.4 3 31 453 30 164 HEX9094039.1 DUF4397 domain-containing protein [Coriobacteriia bacterium] diamond 837 81.6 1 Bacteria   Bacillati Actinomycetota Coriobacteriia       Coriobacteriia bacterium
27607568 27607568 PRJNA1132896_P_NODE_1044_length_509_cov_0.777523_g953_i0 PRJNA1132896 1044 509 0.777523 3.95759207 Piscicoccus intestinalis 746033 Bacteria Bacteria 45.4 0.0437   NR WP_068430052.1 746033 g953 i0 48.8 0.241650294695481 41 21 24.2 0 18 140 205 245 WP_068430052.1 universal stress protein [Piscicoccus intestinalis] diamond 123 45.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Dermatophilaceae Piscicoccus Piscicoccus intestinalis
27639185 27639185 PRJNA1132896_P_NODE_1064_length_502_cov_2.109557_g973_i0 PRJNA1132896 1064 502 2.109557 10.58997614 Pontimonas sp. 2304492 Bacteria Bacteria 107 4.62e-27   NR WP_310689839.1 2304492 g973 i0 76.6 0.460159362549801 77 18 46 0 330 100 2 78 WP_310689839.1 hypothetical protein [Pontimonas sp.] diamond 231 107 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Pontimonas Pontimonas sp.
27702480 27702480 PRJNA1132896_P_NODE_3924_length_290_cov_1.216590_g3833_i0 PRJNA1132896 3924 290 1.21659 3.528111 Frankia sp. AiPa1 573492 Bacteria Bacteria 45.8 0.00538   NR WP_250641374.1 573492 g3833 i0 42.1 0.589655172413793 57 29 54.8 1 20 178 34 90 WP_250641374.1 bis-aminopropyl spermidine synthase family protein [Frankia sp. AiPa1] diamond 171 45.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Frankiales Frankiaceae Frankia Frankia sp. AiPa1
27765504 27765504 PRJNA1132896_P_NODE_6204_length_258_cov_1.048649_g6113_i0 PRJNA1132896 6204 258 1.048649 2.70551442 Candidatus Nanopelagicales bacterium 2518612 Bacteria Bacteria 100 1.3299999999999995e-23   NR HEX6888792.1 2518612 g6113 i0 60.5 0.941860465116279 81 32 94.2 0 245 3 102 182 HEX6888792.1 SGNH/GDSL hydrolase family protein [Candidatus Nanopelagicales bacterium] diamond 243 100 1 Bacteria   Bacillati Actinomycetota Actinomycetes Candidatus Nanopelagicales     Candidatus Nanopelagicales bacterium
27975368 27975368 PRJNA1132896_P_NODE_9485_length_243_cov_0.905882_g9394_i0 PRJNA1132896 9485 243 0.905882 2.20129326 Iamia 467975 Bacteria Bacteria 42.4 0.0417   NR MEZ5178589.1 2201156 g9394 i0 71.4 0.938271604938272 28 8 34.6 0 237 154 29 56 MEZ5178589.1 PLP-dependent transferase [Acidimicrobiales bacterium] diamond 228 42.7 0.992974238875878 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium
28144404 28144404 PRJNA1132896_P_NODE_2285_length_361_cov_0.798611_g2194_i0 PRJNA1132896 2285 361 0.798611 2.88298571 Pontimonas sp. 2304492 Bacteria Bacteria 147 9.22e-44   NR WP_310689839.1 2304492 g2194 i0 98.8 0.681440443213296 82 1 68.1 0 337 92 1 82 WP_310689839.1 hypothetical protein [Pontimonas sp.] diamond 246 147 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Pontimonas Pontimonas sp.
28428441 28428441 PRJNA1132896_P_NODE_3746_length_294_cov_1.180995_g3655_i0 PRJNA1132896 3746 294 1.180995 3.4721253 Catellatospora methionotrophica 121620 Bacteria Bacteria 43.5 0.0382   NR WP_166379738.1 121620 g3655 i0 37.8 0.755102040816326 74 43 72.4 1 16 228 403 476 WP_166379738.1 non-ribosomal peptide synthetase [Catellatospora methionotrophica] diamond 222 43.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Catellatospora Catellatospora methionotrophica
28523193 28523193 PRJNA1132896_P_NODE_3007_length_322_cov_1.373494_g2916_i0 PRJNA1132896 3007 322 1.373494 4.42265068 Pontimonas sp. 2304492 Bacteria Bacteria 97.1 4.68e-24   NR WP_310689840.1 2304492 g2916 i0 87.7 0.531055900621118 57 7 53.1 0 152 322 1 57 WP_310689840.1 hypothetical protein [Pontimonas sp.] diamond 171 97.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Pontimonas Pontimonas sp.
28606842 28606842 PRJNA1132896_P_NODE_407_length_828_cov_1.671523_g329_i0 PRJNA1132896 407 828 1.671523 13.84021044 Bacillati 1783272 Bacteria Bacteria 184 1.6399999999999998e-48   NR MDF1596697.1 2080302 g329 i0 45 3.03985507246377 278 137 98.2 11 814 2 3307 3575 MDF1596697.1 Ig-like domain-containing protein [Acidimicrobiia bacterium] diamond 2517 184 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium
28870317 28870317 PRJNA1132896_P_NODE_5848_length_263_cov_0.794737_g5757_i0 PRJNA1132896 5848 263 0.794737 2.09015831 Streptomyces bobili 67280 Bacteria Bacteria 41.6 0.0232   NR MEV4230570.1 67280 g5757 i0 42.1 0.866920152091255 76 34 78.7 3 230 24 13 85 MEV4230570.1 protein kinase [Streptomyces bobili] diamond 228 41.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces bobili
29501763 29501763 PRJNA1132896_P_NODE_4990_length_275_cov_1.470297_g4899_i0 PRJNA1132896 4990 275 1.470297 4.04331675 Kocuria carniphila 262208 Bacteria Bacteria 134 3.4399999999999996e-35   NR WP_315279454.1 262208 g4899 i0 97.2 2.32363636363636 71 2 77.5 0 213 1 1 71 WP_315279454.1 UDP-N-acetyl-D-mannosamine dehydrogenase [Kocuria carniphila] diamond 639 134 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria carniphila
29690974 29690974 PRJNA1132896_P_NODE_2170_length_369_cov_0.986486_g2079_i0 PRJNA1132896 2170 369 0.986486 3.64013334 Nocardioides panzhihuensis 860243 Bacteria Bacteria 44.7 0.0318   NR WP_179660280.1 860243 g2079 i0 42.2 0.520325203252033 64 31 49.6 2 97 279 227 287 WP_179660280.1 acyltransferase family protein [Nocardioides panzhihuensis] diamond 192 44.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides panzhihuensis
29690977 29690977 PRJNA1132896_P_NODE_9670_length_243_cov_0.905882_g9579_i0 PRJNA1132896 9670 243 0.905882 2.20129326 Luedemannella flava 349316 Bacteria Bacteria 42.7 0.0348   NR MFC7481185.1 349316 g9579 i0 47.4 0.703703703703704 57 25 70.4 2 29 199 230 281 MFC7481185.1 hypothetical protein [Luedemannella flava] diamond 171 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Luedemannella Luedemannella flava
29849293 29849293 PRJNA1132896_P_NODE_8611_length_246_cov_0.890173_g8520_i0 PRJNA1132896 8611 246 0.890173 2.18982558 Actinopolyspora xinjiangensis 405564 Bacteria Bacteria 43.5 0.0197   NR WP_092604381.1 405564 g8520 i0 41.1 0.682926829268293 56 29 63.4 1 29 184 223 278 WP_092604381.1 acyltransferase family protein [Actinopolyspora xinjiangensis] diamond 168 43.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Actinopolysporales Actinopolysporaceae Actinopolyspora Actinopolyspora xinjiangensis
29849295 29849295 PRJNA1132896_P_NODE_9671_length_243_cov_0.905882_g9580_i0 PRJNA1132896 9671 243 0.905882 2.20129326 Actinomycetota bacterium 2900548 Bacteria Bacteria 143 3.039999999999999e-38   NR MDQ5894298.1 2900548 g9580 i0 84.6 2.93827160493827 78 12 96.3 0 3 236 429 506 MDQ5894298.1 hypothetical protein [Actinomycetota bacterium] diamond 714 143 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
29901575 29901575 PRJNA1132896_P_NODE_2851_length_330_cov_0.898833_g2760_i0 PRJNA1132896 2851 330 0.898833 2.9661489 root 1 Root_unresolved Root_unresolved 139 2.88e-38   NR WP_344820665.1 1760 g2760 i0 60 2 110 44 100 0 330 1 137 246 WP_344820665.1 MULTISPECIES: hypothetical protein [Actinomycetes] diamond 660 139 1 Bacteria   Bacillati Actinomycetota Actinomycetes        
29975560 29975560 PRJNA1132896_P_NODE_3591_length_299_cov_1.977876_g3500_i0 PRJNA1132896 3591 299 1.977876 5.91384924 Acidimicrobiia bacterium 2080302 Bacteria Bacteria 134 2.99e-36   NR MDJ0959068.1 2080302 g3500 i0 61.9 11.3578595317726 97 37 97.3 0 292 2 3 99 MDJ0959068.1 crotonase/enoyl-CoA hydratase family protein [Acidimicrobiia bacterium] diamond 3396 134 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium
29975566 29975566 PRJNA1132896_P_NODE_9031_length_244_cov_1.555556_g8940_i0 PRJNA1132896 9031 244 1.555556 3.79555664 Nocardia macrotermitis 2585198 Bacteria Bacteria 43.1 0.0195   NR WP_153412348.1 2585198 g8940 i0 50 0.442622950819672 36 18 44.3 0 234 127 124 159 WP_153412348.1 hypothetical protein [Nocardia macrotermitis] diamond 108 43.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia macrotermitis
30733792 30733792 PRJNA1132896_P_NODE_5954_length_261_cov_2.074468_g5863_i0 PRJNA1132896 5954 261 2.074468 5.41436148 Streptomyces oceani 1075402 Bacteria Bacteria 44.3 0.0125   NR WP_244502578.1 1075402 g5863 i0 43.5 0.528735632183908 46 25 51.7 1 8 142 200 245 WP_244502578.1 hybrid-cluster NAD(P)-dependent oxidoreductase [Streptomyces oceani] diamond 138 44.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces oceani
31018259 31018259 PRJNA1132896_P_NODE_3155_length_316_cov_1.160494_g3064_i0 PRJNA1132896 3155 316 1.160494 3.66716104 Streptomyces atratus 1893 Bacteria Bacteria 44.3 0.0245   NR WP_382301690.1 1893 g3064 i0 57.1 0.79746835443038 42 17 38.9 1 135 13 21 62 WP_382301690.1 non-ribosomal peptide synthetase [Streptomyces atratus] diamond 252 44.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces atratus
31924293 31924293 PRJNA1132896_P_NODE_9857_length_242_cov_0.911243_g9766_i0 PRJNA1132896 9857 242 0.911243 2.20520806 Bacillati 1783272 Bacteria Bacteria 42.4 0.0477   NR WP_271279566.1 83681 g9766 i0 41.3 1.40082644628099 46 26 55.8 1 52 186 267 312 WP_271279566.1 MULTISPECIES: HAD-IIA family hydrolase [Nonomuraea] diamond 339 42.7 0.992974238875878 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Nonomuraea  
32209161 32209161 PRJNA1132896_P_NODE_9718_length_242_cov_1.822485_g9627_i0 PRJNA1132896 9718 242 1.822485 4.4104137 Bacillati 1783272 Bacteria Bacteria 47.8 6.13e-4   NR WP_388314026.1 66422 g9627 i0 38.2 4.5495867768595 76 42 88 1 14 226 223 298 WP_388314026.1 RCC1 domain-containing protein [Streptomyces cinerochromogenes] diamond 1101 47.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces cinerochromogenes
32757014 32757014 PRJNA1132896_P_NODE_5320_length_270_cov_1.563452_g5229_i0 PRJNA1132896 5320 270 1.563452 4.2213204 Collinsella aerofaciens 74426 Bacteria Bacteria 167 4.82e-51   NR WP_238023319.1 74426 g5229 i0 97.8 0.988888888888889 89 2 98.9 0 3 269 31 119 WP_238023319.1 hypothetical protein, partial [Collinsella aerofaciens] diamond 267 167 1 Bacteria   Bacillati Actinomycetota Coriobacteriia Coriobacteriales Coriobacteriaceae Collinsella Collinsella aerofaciens
32788361 32788361 PRJNA1132896_P_NODE_6480_length_254_cov_1.419890_g6389_i0 PRJNA1132896 6480 254 1.41989 3.6065206 Actinomadura nitritigenes 134602 Bacteria Bacteria 42.7 0.042   NR WP_208265424.1 134602 g6389 i0 42.1 0.897637795275591 76 35 87.4 3 20 241 272 340 WP_208265424.1 PrsW family glutamic-type intramembrane protease [Actinomadura nitritigenes] diamond 228 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinomadura Actinomadura nitritigenes

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;