RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA1129273" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1129273 · 7 ✖

analysis 1

  • diamond · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27828460 27828460 PRJNA1129273_P_NODE_8804_length_250_cov_1.728814_g8524_i0 PRJNA1129273 8804 250 1.728814 4.322035 Myxococcaceae bacterium 2484252 Bacteria Bacteria 95.5 1.2299999999999997e-23   NR MDB5213267.1 2484252 g8524 i0 69.6 3.276 69 21 82.8 0 208 2 1 69 MDB5213267.1 Acyl-CoA-binding protein [Myxococcaceae bacterium] diamond 819 95.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
30038722 30038722 PRJNA1129273_P_NODE_3971_length_362_cov_1.031142_g3691_i0 PRJNA1129273 3971 362 1.031142 3.73273404 Nannocystaceae bacterium 2545255 Bacteria Bacteria 50.1 3.63e-4   NR MEZ4454641.1 2545255 g3691 i0 32.1 2.42817679558011 78 46 58.8 2 9 221 225 302 MEZ4454641.1 hypothetical protein [Nannocystaceae bacterium] diamond 879 50.1 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae   Nannocystaceae bacterium
30323644 30323644 PRJNA1129273_P_NODE_10672_length_241_cov_2.750000_g10392_i0 PRJNA1129273 10672 241 2.75 6.6275 Polyangiaceae bacterium 2268199 Bacteria Bacteria 42.4 0.0465   NR HEX2730302.1 2268199 g10392 i0 38.9 0.672199170124481 54 30 64.7 2 239 84 51 103 HEX2730302.1 hypothetical protein [Polyangiaceae bacterium] diamond 162 42.4 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
30544297 30544297 PRJNA1129273_P_NODE_7973_length_259_cov_1.446237_g7693_i0 PRJNA1129273 7973 259 1.446237 3.74575383 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 80.9 3.72e-17   NR MBV8137980.1 2026735 g7693 i0 56.8 0.938223938223938 81 20 88 3 256 29 57 127 MBV8137980.1 class I SAM-dependent methyltransferase [Deltaproteobacteria bacterium] diamond 243 80.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31050098 31050098 PRJNA1129273_P_NODE_10375_length_243_cov_0.905882_g10095_i0 PRJNA1129273 10375 243 0.905882 2.20129326 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 59.7 5.36e-9   NR MBI4817722.1 2026735 g10095 i0 50 2.40740740740741 50 25 61.7 0 91 240 3 52 MBI4817722.1 MAPEG family protein [Deltaproteobacteria bacterium] diamond 585 59.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31133398 31133398 PRJNA1129273_P_NODE_9855_length_245_cov_0.906977_g9575_i0 PRJNA1129273 9855 245 0.906977 2.22209365 Myxococcia 32015 Bacteria Bacteria 43.1 0.0268   NR MBL8679454.1 2026763 g9575 i0 40 1.21224489795918 50 25 55.1 1 104 238 259 308 MBL8679454.1 trypsin-like serine protease [Myxococcales bacterium] diamond 297 43.5 0.990804597701149 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
31334157 31334157 PRJNA1129273_P_NODE_9636_length_246_cov_1.456647_g9356_i0 PRJNA1129273 9636 246 1.456647 3.58335162 Myxococcales bacterium 2026763 Bacteria Bacteria 42.7 0.0389   NR HZR08877.1 2026763 g9356 i0 43.6 0.670731707317073 55 31 67.1 0 238 74 530 584 HZR08877.1 hypothetical protein [Myxococcales bacterium] diamond 165 42.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;