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contig_metadata

27 rows where analysis = "diamond", bioproject = "PRJNA1129273" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 27 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1129273 · 27 ✖

analysis 1

  • diamond · 27 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10486757 10486757 PRJNA1129273_P_NODE_2729_length_460_cov_2.067183_g2451_i0 PRJNA1129273 2729 460 2.067183 9.5090418 root 1 Root_unresolved Root_unresolved 242 2.3600000000000003e-79   NR XP_067573228.1 82174 g2451 i0 86.2 14.3869565217391 138 19 90 0 415 2 27 164 XP_067573228.1 large ribosomal subunit protein uL14 [Pseudorca crassidens] diamond 6618 244 0.991803278688525 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Delphinidae Pseudorca Pseudorca crassidens
11761879 11761879 PRJNA1129273_P_NODE_6930_length_273_cov_2.805000_g6650_i0 PRJNA1129273 6930 273 2.805 7.65765 Chordata 7711 Chordata Chordata 132 9.07e-38   NR OCT66684.1 8355 g6650 i0 85.1 62.4835164835165 74 11 81.3 0 52 273 5 78 OCT66684.1 hypothetical protein XELAEV_18042936mg [Xenopus laevis] diamond 17058 132 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
13037001 13037001 PRJNA1129273_P_NODE_8731_length_251_cov_0.865169_g8451_i0 PRJNA1129273 8731 251 0.865169 2.17157419 Opisthokonta 33154 Chordata Chordata 99 6.88e-22   NR CAH2312517.1 61616 g8451 i0 54.3 16.6733067729084 81 37 96.8 0 7 249 324 404 CAH2312517.1 ubiquitin carboxyl-terminal hydrolase 4 isoform X1 [Pelobates cultripes] diamond 4185 99 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pelobatidae Pelobates Pelobates cultripes
14312190 14312190 PRJNA1129273_P_NODE_2772_length_455_cov_2.803665_g2494_i0 PRJNA1129273 2772 455 2.803665 12.75667575 Metazoa 33208 Chordata Chordata 189 9.29e-59   NR XP_019626701.1 7741 g2494 i0 72.4 62.5120879120879 123 34 81.1 0 403 35 13 135 XP_019626701.1 PREDICTED: 40S ribosomal protein S17-like [Branchiostoma belcheri] diamond 28443 190 0.994736842105263 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
26658578 26658578 PRJNA1129273_P_NODE_7901_length_260_cov_1.224599_g7621_i0 PRJNA1129273 7901 260 1.224599 3.1839574 Ranitomeya imitator 111125 Chordata Chordata 91.3 3.55e-19   NR XP_069603456.1 111125 g7621 i0 48.9 4.08461538461538 92 39 96.9 1 260 9 24 115 XP_069603456.1 heat shock factor protein 3-like [Ranitomeya imitator] diamond 1062 91.3 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
26721728 26721728 PRJNA1129273_P_NODE_9441_length_247_cov_1.183908_g9161_i0 PRJNA1129273 9441 247 1.183908 2.92425276 Bombina bombina 8345 Chordata Chordata 48.5 3.61e-4   NR XP_053576221.1 8345 g9161 i0 47.8 1.25101214574899 67 30 81.4 1 1 201 103 164 XP_053576221.1 basic helix-loop-helix ARNT-like protein 1 [Bombina bombina] diamond 309 48.9 0.991820040899796 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bombinatoridae Bombina Bombina bombina
26943677 26943677 PRJNA1129273_P_NODE_4822_length_325_cov_1.210317_g4542_i0 PRJNA1129273 4822 325 1.210317 3.93353025 Dendropsophus ebraccatus 150705 Chordata Chordata 50.1 1.91e-4   NR XP_069823672.1 150705 g4542 i0 34.1 2.95384615384615 85 56 78.5 0 256 2 77 161 XP_069823672.1 regulator of G-protein signaling 4 [Dendropsophus ebraccatus] diamond 960 50.4 0.994047619047619 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hylidae Dendropsophus Dendropsophus ebraccatus
27249036 27249036 PRJNA1129273_P_NODE_7063_length_271_cov_2.272727_g6783_i0 PRJNA1129273 7063 271 2.272727 6.15909017 Opisthokonta 33154 Chordata Chordata 74.7 2.36e-14   NR CAH1266302.1 7740 g6783 i0 46.1 7.77121771217712 76 37 84.1 1 3 230 104 175 CAH1266302.1 METTL10 [Branchiostoma lanceolatum] diamond 2106 75.1 0.994673768308922 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
27449720 27449720 PRJNA1129273_P_NODE_7523_length_265_cov_1.598958_g7243_i0 PRJNA1129273 7523 265 1.598958 4.2372387 Lepidochelys kempii 8472 Chordata Chordata 49.3 2.01e-4   NR CAM4665324.1 8472 g7243 i0 33 2.55849056603774 88 56 97.4 2 3 260 175 261 CAM4665324.1 unnamed protein product [Lepidochelys kempii] diamond 678 49.3 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Lepidochelys Lepidochelys kempii
27691593 27691593 PRJNA1129273_P_NODE_2384_length_504_cov_3.737819_g2108_i0 PRJNA1129273 2384 504 3.737819 18.83860776 Chordata 7711 Chordata Chordata 194 3.7299999999999997e-60   NR KAK9406484.1 8729 g2108 i0 67.1 63.0178571428571 146 44 85.1 2 477 49 38 182 KAK9406484.1 hypothetical protein NXF25_005258 [Crotalus adamanteus] diamond 31761 195 0.994871794871795 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Viperidae Crotalus Crotalus adamanteus
28017988 28017988 PRJNA1129273_P_NODE_3945_length_364_cov_1.553265_g3665_i0 PRJNA1129273 3945 364 1.553265 5.6538846 Nothoprocta perdicaria 30464 Chordata Chordata 133 2.57e-34   NR XP_025893513.1 30464 g3665 i0 52.5 20.5137362637363 120 57 98.9 0 3 362 115 234 XP_025893513.1 thioredoxin reductase 2, mitochondrial isoform X2 [Nothoprocta perdicaria] diamond 7467 133 1 Eukaryota Opisthokonta Metazoa Chordata Aves Tinamiformes Tinamidae Nothoprocta Nothoprocta perdicaria
28207138 28207138 PRJNA1129273_P_NODE_8166_length_256_cov_2.546448_g7886_i0 PRJNA1129273 8166 256 2.546448 6.51890688 Pelodiscus sinensis 13735 Chordata Chordata 79.7 4.07e-15   NR XP_014428299.1 13735 g7886 i0 41.8 0.92578125 79 46 92.6 0 18 254 421 499 XP_014428299.1 uncharacterized protein LOC102449480 [Pelodiscus sinensis] diamond 237 79.7 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Trionychidae Pelodiscus Pelodiscus sinensis
28417651 28417651 PRJNA1129273_P_NODE_2946_length_437_cov_2.282967_g2667_i0 PRJNA1129273 2946 437 2.282967 9.97656579 Metazoa 33208 Chordata Chordata 48.9 0.00142   NR KAE8614077.1 8364 g2667 i0 46.9 1.24942791762014 49 24 33 2 436 293 126 173 KAE8614077.1 hypothetical protein XENTR_v10007970 [Xenopus tropicalis] diamond 546 49.3 0.991886409736308 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
28681107 28681107 PRJNA1129273_P_NODE_5587_length_299_cov_1.358407_g5307_i0 PRJNA1129273 5587 299 1.358407 4.06163693 Branchiostoma lanceolatum 7740 Chordata Chordata 101 1.99e-22   NR CAH1271242.1 7740 g5307 i0 45.4 1.93645484949833 97 52 97.3 1 293 3 530 625 CAH1271242.1 CTSB [Branchiostoma lanceolatum] diamond 579 101 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
28965265 28965265 PRJNA1129273_P_NODE_6908_length_274_cov_1.213930_g6628_i0 PRJNA1129273 6908 274 1.21393 3.3261682 Branchiostoma belcheri 7741 Chordata Chordata 73.9 5.81e-14   NR XP_019641890.1 7741 g6628 i0 52.6 2.54014598540146 76 31 81 2 4 225 109 181 XP_019641890.1 PREDICTED: apolipoprotein D-like [Branchiostoma belcheri] diamond 696 74.3 0.994616419919246 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
29438335 29438335 PRJNA1129273_P_NODE_6290_length_284_cov_1.454976_g6010_i0 PRJNA1129273 6290 284 1.454976 4.1321318399999996 Pseudophryne corroboree 495146 Chordata Chordata 108 6.3499999999999995e-25   NR XP_063790493.1 495146 g6010 i0 55.9 29.4718309859155 93 41 98.2 0 4 282 2032 2124 XP_063790493.1 dynein axonemal heavy chain 3 isoform X1 [Pseudophryne corroboree] diamond 8370 108 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Myobatrachidae Pseudophryne Pseudophryne corroboree
29459072 29459072 PRJNA1129273_P_NODE_8550_length_252_cov_0.865922_g8270_i0 PRJNA1129273 8550 252 0.865922 2.18212344 Amphibia 8292 Chordata Chordata 96.7 3.3800000000000003e-21   NR KAG8439598.1 247094 g8270 i0 71.7 97.1428571428571 60 17 71.4 0 3 182 422 481 KAG8439598.1 hypothetical protein GDO86_005690 [Hymenochirus boettgeri] diamond 24480 97.4 0.992813141683778 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Hymenochirus Hymenochirus boettgeri
29880974 29880974 PRJNA1129273_P_NODE_8751_length_251_cov_0.865169_g8471_i0 PRJNA1129273 8751 251 0.865169 2.17157419 Hyperolius riggenbachi 752182 Chordata Chordata 70.5 4.67e-12   NR XP_068089090.1 752182 g8471 i0 46.4 3.26294820717131 69 36 81.3 1 248 45 241 309 XP_068089090.1 tubulin-specific chaperone C [Hyperolius riggenbachi] diamond 819 70.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hyperoliidae Hyperolius Hyperolius riggenbachi
30659704 30659704 PRJNA1129273_P_NODE_6573_length_279_cov_1.490291_g6293_i0 PRJNA1129273 6573 279 1.490291 4.15791189 Aves 8782 Chordata Chordata 59.3 6.79e-8   NR KAG6934453.1 8475 g6293 i0 82.4 11.4408602150538 34 6 36.6 0 103 2 44 77 KAG6934453.1 proliferating cell nuclear antigen, partial [Chelydra serpentina] diamond 3192 59.7 0.993299832495812 Eukaryota Opisthokonta Metazoa Chordata   Testudines Chelydridae Chelydra Chelydra serpentina
30860238 30860238 PRJNA1129273_P_NODE_7794_length_261_cov_1.643617_g7514_i0 PRJNA1129273 7794 261 1.643617 4.28984037 Ranitomeya imitator 111125 Chordata Chordata 84.7 7.72e-17   NR CAJ0941053.1 111125 g7514 i0 43 3.95402298850575 86 46 98.9 1 259 2 215 297 CAJ0941053.1 unnamed protein product [Ranitomeya imitator] diamond 1032 84.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
30975824 30975824 PRJNA1129273_P_NODE_9794_length_245_cov_2.244186_g9514_i0 PRJNA1129273 9794 245 2.244186 5.4982557 Metazoa 33208 Chordata Chordata 111 3.03e-26   NR XP_039260143.1 7725 g9514 i0 60.3 35.0816326530612 78 31 95.5 0 241 8 842 919 XP_039260143.1 splicing factor 3B subunit 1-like [Styela clava] diamond 8595 112 0.991071428571429 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
31007298 31007298 PRJNA1129273_P_NODE_7654_length_263_cov_2.284211_g7374_i0 PRJNA1129273 7654 263 2.284211 6.00747493 Rodentia 9989 Chordata Chordata 80.1 3.21e-15   NR XP_055461105.1 48139 g7374 i0 49.2 7.68821292775665 65 33 74.1 0 220 26 11 75 XP_055461105.1 heat shock factor protein 3-like [Psammomys obesus] diamond 2022 80.9 0.990111248454882 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Psammomys Psammomys obesus
31196456 31196456 PRJNA1129273_P_NODE_6055_length_288_cov_1.116279_g5775_i0 PRJNA1129273 6055 288 1.116279 3.21488352 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 92.4 1.26e-19   NR POI35210.1 9083 g5775 i0 54.3 6.73958333333333 81 37 84.4 0 243 1 154 234 POI35210.1 hypothetical protein CIB84_001037 [Bambusicola thoracicus] diamond 1941 93.2 0.991416309012876 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Bambusicola Bambusicola thoracicus
31429115 31429115 PRJNA1129273_P_NODE_9976_length_244_cov_7.970760_g9696_i0 PRJNA1129273 9976 244 7.97076 19.4486544 Heptranchias perlo 212740 Chordata Chordata 62 6.07e-9   NR XP_067841360.1 212740 g9696 i0 56.9 0.713114754098361 58 25 71.3 0 243 70 12 69 XP_067841360.1 LOW QUALITY PROTEIN: S-adenosylmethionine-dependent nucleotide dehydratase RSAD2 [Heptranchias perlo] diamond 174 62 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Hexanchiformes Hexanchidae Heptranchias Heptranchias perlo
32030294 32030294 PRJNA1129273_P_NODE_9958_length_245_cov_0.883721_g9678_i0 PRJNA1129273 9958 245 0.883721 2.16511645 Strigops habroptila 2489341 Chordata Chordata 77.4 7.84e-15   NR XP_030330861.1 2489341 g9678 i0 58.7 27.4530612244898 75 26 85.7 2 3 212 201 275 XP_030330861.1 ras-related protein Rab-4B isoform X1 [Strigops habroptila] diamond 6726 77.4 1 Eukaryota Opisthokonta Metazoa Chordata Aves Psittaciformes Psittacidae Strigops Strigops habroptila
32304316 32304316 PRJNA1129273_P_NODE_10979_length_232_cov_2.138365_g10699_i0 PRJNA1129273 10979 232 2.138365 4.9610068 Opisthokonta 33154 Chordata Chordata 107 3.22e-25   NR XP_035667521.1 7739 g10699 i0 59.7 8.96120689655172 77 31 99.6 0 231 1 72 148 XP_035667521.1 ornithine decarboxylase-like [Branchiostoma floridae] diamond 2079 108 0.990740740740741 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
32568326 32568326 PRJNA1129273_P_NODE_8639_length_251_cov_1.662921_g8359_i0 PRJNA1129273 8639 251 1.662921 4.17393171 Corvus moneduloides 1196302 Chordata Chordata 42.7 0.0385   NR XP_031965472.1 1196302 g8359 i0 35.9 0.932270916334661 78 36 90.8 3 228 1 84 149 XP_031965472.1 vegetative cell wall protein gp1-like [Corvus moneduloides] diamond 234 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Corvidae Corvus Corvus moneduloides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;