RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1129273" and tax_phylum = "Chloroflexota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1129273 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19409188 19409188 PRJNA1129273_P_NODE_8976_length_249_cov_2.232955_g8696_i0 PRJNA1129273 8976 249 2.232955 5.56005795 Chloroflexota bacterium 2026724 Bacteria Bacteria 164 1.61e-50   NR MDQ3705110.1 2026724 g8696 i0 98.8 0.987951807228916 82 1 98.8 0 247 2 22 103 MDQ3705110.1 MFS transporter [Chloroflexota bacterium] diamond 246 164 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
28681109 28681109 PRJNA1129273_P_NODE_6287_length_284_cov_1.459716_g6007_i0 PRJNA1129273 6287 284 1.459716 4.14559344 Ardenticatenaceae bacterium 2614247 Bacteria Bacteria 161 5.79e-49   NR MCB9430965.1 2614247 g6007 i0 84.8 0.971830985915493 92 14 97.2 0 276 1 1 92 MCB9430965.1 profilin [Ardenticatenaceae bacterium] diamond 276 161 1 Bacteria   Bacillati Chloroflexota Ardenticatenia Ardenticatenales Ardenticatenaceae   Ardenticatenaceae bacterium
29817443 29817443 PRJNA1129273_P_NODE_6011_length_288_cov_2.153488_g5731_i0 PRJNA1129273 6011 288 2.153488 6.20204544 Ktedonobacteraceae bacterium 2740538 Bacteria Bacteria 123 2.97e-31   NR MBO0781359.1 2740538 g5731 i0 60.6 0.979166666666667 94 37 97.9 0 287 6 88 181 MBO0781359.1 MFS transporter [Ktedonobacteraceae bacterium] diamond 282 123 1 Bacteria   Bacillati Chloroflexota Ktedonobacteria Ktedonobacterales Ktedonobacteraceae   Ktedonobacteraceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;