RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1129273" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1129273 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26627143 26627143 PRJNA1129273_P_NODE_9821_length_245_cov_1.726744_g9541_i0 PRJNA1129273 9821 245 1.726744 4.2305228 Acidobacteriota bacterium 1978231 Bacteria Bacteria 60.8 1.34e-8   NR MBK8197439.1 1978231 g9541 i0 53.7 1.18775510204082 54 25 66.1 0 164 3 30 83 MBK8197439.1 hypothetical protein [Acidobacteriota bacterium] diamond 291 60.8 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
27659836 27659836 PRJNA1129273_P_NODE_4744_length_327_cov_2.370079_g4464_i0 PRJNA1129273 4744 327 2.370079 7.75015833 Acidobacteriota 57723 Bacteria Bacteria 134 3.85e-36   NR HUH63403.1 1964191 g4464 i0 63.9 10.7155963302752 108 39 99.1 0 3 326 169 276 HUH63403.1 aldolase/citrate lyase family protein [Terracidiphilus sp.] diamond 3504 134 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Terracidiphilus Terracidiphilus sp.
29533459 29533459 PRJNA1129273_P_NODE_4950_length_320_cov_3.040486_g4670_i0 PRJNA1129273 4950 320 3.040486 9.7295552 Acidobacteriaceae bacterium 2052142 Bacteria Bacteria 84.3 2.21e-16   NR MDR3736461.1 2052142 g4670 i0 74.5 0.478125 51 13 47.8 0 319 167 89 139 MDR3736461.1 chaperonin GroEL [Acidobacteriaceae bacterium] diamond 153 84.3 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   Acidobacteriaceae bacterium
32788345 32788345 PRJNA1129273_P_NODE_10960_length_232_cov_3.094340_g10680_i0 PRJNA1129273 10960 232 3.09434 7.1788688 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 43.1 0.0215   NR MBV6495434.1 2283092 g10680 i0 33.9 0.724137931034483 56 31 72.4 1 10 177 199 248 MBV6495434.1 Gamma-glutamyl-gamma-aminobutyrate hydrolase PuuD [Pyrinomonadaceae bacterium] diamond 168 43.1 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;