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contig_metadata

31 rows where analysis = "diamond", bioproject = "PRJNA1126661" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 31 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1126661 · 31 ✖

analysis 1

  • diamond · 31 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4859142 4859142 PRJNA1126661_P_NODE_56764_length_285_cov_2.655660_g56235_i0 PRJNA1126661 56764 285 2.65566 7.568631 Bos mutus 72004 Chordata Chordata 103 2.659999999999999e-23   NR MXQ97887.1 72004 g56235 i0 84.5 0.610526315789474 58 9 61.1 0 285 112 275 332 MXQ97887.1 hypothetical protein [Bos mutus] diamond 174 103 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos mutus
26647694 26647694 PRJNA1126661_P_NODE_68101_length_258_cov_3.372973_g67571_i0 PRJNA1126661 68101 258 3.372973 8.70227034 Rodentia 9989 Chordata Chordata 72.8 1.19e-12   NR XP_063102729.1 10141 g67571 i0 51.8 4.54651162790698 85 40 97.7 1 3 254 74 158 XP_063102729.1 LOW QUALITY PROTEIN: uncharacterized protein LOC134475532 [Cavia porcellus] diamond 1173 72.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Caviidae Cavia Cavia porcellus
27006903 27006903 PRJNA1126661_P_NODE_50322_length_295_cov_6.671171_g49793_i0 PRJNA1126661 50322 295 6.671171 19.67995445 Equus caballus 9796 Chordata Chordata 72.8 1.98e-12   NR XP_070092655.1 9796 g49793 i0 36 2.05423728813559 111 53 96.6 2 294 10 846 954 XP_070092655.1 xanthine dehydrogenase/oxidase isoform X7 [Equus caballus] diamond 606 72.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Perissodactyla Equidae Equus Equus caballus
27702448 27702448 PRJNA1126661_P_NODE_14664_length_326_cov_5.169960_g14135_i0 PRJNA1126661 14664 326 5.16996 16.8540696 Capra hircus 9925 Chordata Chordata 79.3 1.47e-14   NR KAJ1062084.1 9925 g14135 i0 88.6 0.404907975460123 44 5 40.5 0 308 177 1458 1501 KAJ1062084.1 hypothetical protein K5549_008426 [Capra hircus] diamond 132 79.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Capra Capra hircus
27786175 27786175 PRJNA1126661_P_NODE_85144_length_207_cov_4.656716_g84614_i0 PRJNA1126661 85144 207 4.656716 9.63940212 Chordata 7711 Chordata Chordata 43.1 0.0168   NR KAE8579759.1 8364 g84614 i0 65.5 18.8405797101449 29 10 42 0 140 54 48 76 KAE8579759.1 hypothetical protein XENTR_v10024172 [Xenopus tropicalis] diamond 3900 43.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
28049441 28049441 PRJNA1126661_P_NODE_72585_length_247_cov_0.896552_g72055_i0 PRJNA1126661 72585 247 0.896552 2.21448344 Crocuta crocuta 9678 Chordata Chordata 46.2 4.62e-4   NR KAF0883704.1 9678 g72055 i0 45.6 0.692307692307692 57 30 69.2 1 244 74 37 92 KAF0883704.1 LORF2 protein, partial [Crocuta crocuta] diamond 171 46.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Hyaenidae Crocuta Crocuta crocuta
28133416 28133416 PRJNA1126661_P_NODE_56365_length_286_cov_1.464789_g55836_i0 PRJNA1126661 56365 286 1.464789 4.18929654 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 50.4 1.16e-4   NR KAB0350660.1 9888 g55836 i0 59.5 1.37412587412587 37 15 38.8 0 286 176 255 291 KAB0350660.1 hypothetical protein FD754_015517 [Muntiacus muntjak] diamond 393 50.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Muntiacus Muntiacus muntjak
28227731 28227731 PRJNA1126661_P_NODE_30706_length_325_cov_8.996032_g30177_i0 PRJNA1126661 30706 325 8.996032 29.237104 Chordata 7711 Chordata Chordata 48.5 8.85e-4   NR XP_069087130.1 8319 g30177 i0 76.9 50.4 26 6 24 0 2 79 277 302 XP_069087130.1 dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B isoform X1 [Pleurodeles waltl] diamond 16380 48.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
28238680 28238680 PRJNA1126661_P_NODE_61746_length_273_cov_9.730000_g61216_i0 PRJNA1126661 61746 273 9.73 26.5629 Pipistrellus kuhlii 59472 Chordata Chordata 49.3 1.19e-4   NR KAF6382508.1 59472 g61216 i0 39.4 0.725274725274725 66 40 72.5 0 28 225 84 149 KAF6382508.1 hypothetical protein mPipKuh1_008870 [Pipistrellus kuhlii] diamond 198 49.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Vespertilionidae Pipistrellus Pipistrellus kuhlii
28365026 28365026 PRJNA1126661_P_NODE_87626_length_200_cov_4.818898_g87096_i0 PRJNA1126661 87626 200 4.818898 9.637796 Sus scrofa 9823 Chordata Chordata 54.7 1.3e-6   NR XP_020937328.1 9823 g87096 i0 60 0.75 50 20 75 0 44 193 7 56 XP_020937328.1 collagen alpha-2(I) chain-like [Sus scrofa] diamond 150 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
28775565 28775565 PRJNA1126661_P_NODE_36427_length_301_cov_5.118421_g35898_i0 PRJNA1126661 36427 301 5.118421 15.40644721 Oikopleura dioica 34765 Chordata Chordata 65.9 1.07e-10   NR CBY14637.1 34765 g35898 i0 55.1 0.488372093023256 49 22 48.8 0 8 154 61 109 CBY14637.1 unnamed protein product [Oikopleura dioica] diamond 147 65.9 1 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica
28901766 28901766 PRJNA1126661_P_NODE_56968_length_284_cov_5.213270_g56439_i0 PRJNA1126661 56968 284 5.21327 14.8056868 Heptranchias perlo 212740 Chordata Chordata 43.1 0.0395   NR XP_067854053.1 212740 g56439 i0 40.7 1.24647887323944 59 30 62.3 1 221 45 42 95 XP_067854053.1 pleckstrin homology domain-containing family F member 1 isoform X2 [Heptranchias perlo] diamond 354 43.1 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Hexanchiformes Hexanchidae Heptranchias Heptranchias perlo
28954440 28954440 PRJNA1126661_P_NODE_15348_length_326_cov_4.952569_g14819_i0 PRJNA1126661 15348 326 4.9525690000000004 16.14537494 Mammalia 40674 Chordata Chordata 124 1.2499999999999999e-31   NR OWK09498.1 46360 g14819 i0 57.3 4.44478527607362 124 35 99.4 3 2 325 38 159 OWK09498.1 HEXA [Cervus elaphus hippelaphus] diamond 1449 125 0.992 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Cervus Cervus elaphus
28996966 28996966 PRJNA1126661_P_NODE_54408_length_290_cov_2.382488_g53879_i0 PRJNA1126661 54408 290 2.382488 6.9092152 Crocuta crocuta 9678 Chordata Chordata 53.5 7.01e-6   NR KAF0871064.1 9678 g53879 i0 79.3 0.3 29 6 30 0 176 262 37 65 KAF0871064.1 LORF2 protein, partial [Crocuta crocuta] diamond 87 53.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Hyaenidae Crocuta Crocuta crocuta
29469962 29469962 PRJNA1126661_P_NODE_15410_length_326_cov_4.936759_g14881_i0 PRJNA1126661 15410 326 4.936759 16.09383434 Rhinolophus ferrumequinum 59479 Chordata Chordata 45.1 0.014   NR KAF6384585.1 59479 g14881 i0 69.2 0.358895705521472 39 8 32.2 1 181 285 347 385 KAF6384585.1 diacylglycerol kinase gamma [Rhinolophus ferrumequinum] diamond 117 45.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Rhinolophidae Rhinolophus Rhinolophus ferrumequinum
29880963 29880963 PRJNA1126661_P_NODE_65771_length_264_cov_3.251309_g65241_i0 PRJNA1126661 65771 264 3.251309 8.58345576 Chiloscyllium punctatum 137246 Chordata Chordata 47.4 8.22e-4   NR GCC28413.1 137246 g65241 i0 35.1 1.10227272727273 97 54 100 1 264 1 56 152 GCC28413.1 hypothetical protein [Chiloscyllium punctatum] diamond 291 47.4 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Orectolobiformes Hemiscylliidae Chiloscyllium Chiloscyllium punctatum
29901570 29901570 PRJNA1126661_P_NODE_34431_length_301_cov_7.153509_g33902_i0 PRJNA1126661 34431 301 7.153509 21.53206209 Canidae 9608 Chordata Chordata 54.7 4.43e-6   NR XP_025848724.1 9627 g33902 i0 67.6 0.767441860465116 37 8 32.9 1 53 151 296 332 XP_025848724.1 DNA repair protein XRCC4 isoform X1 [Vulpes vulpes] diamond 231 55.1 0.992740471869329 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Vulpes Vulpes vulpes
29933221 29933221 PRJNA1126661_P_NODE_31571_length_324_cov_4.653386_g31042_i0 PRJNA1126661 31571 324 4.653386 15.07697064 Chordata 7711 Chordata Chordata 98.6 1.07e-22   NR XP_069090379.1 8319 g31042 i0 100 78.4907407407407 49 0 45.4 0 322 176 177 225 XP_069090379.1 calcineurin subunit B type 1 [Pleurodeles waltl] diamond 25431 98.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
30418237 30418237 PRJNA1126661_P_NODE_70673_length_251_cov_5.702247_g70143_i0 PRJNA1126661 70673 251 5.702247 14.31263997 Sus scrofa 9823 Chordata Chordata 64.3 1.05e-9   NR XP_020937328.1 9823 g70143 i0 55 0.717131474103586 60 27 71.7 0 32 211 4 63 XP_020937328.1 collagen alpha-2(I) chain-like [Sus scrofa] diamond 180 64.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
30481102 30481102 PRJNA1126661_P_NODE_52013_length_294_cov_2.190045_g51484_i0 PRJNA1126661 52013 294 2.190045 6.4387323 Steatornis caripensis 48435 Chordata Chordata 51.2 6.97e-5   NR NWX47644.1 48435 g51484 i0 40 3.33673469387755 75 44 75.5 1 1 222 241 315 NWX47644.1 LRC40 protein [Steatornis caripensis] diamond 981 51.2 1 Eukaryota Opisthokonta Metazoa Chordata Aves Caprimulgiformes Steatornithidae Steatornis Steatornis caripensis
30544288 30544288 PRJNA1126661_P_NODE_75933_length_238_cov_3.781818_g75403_i0 PRJNA1126661 75933 238 3.781818 9.00072684 Eschrichtius robustus 9764 Chordata Chordata 43.5 0.0191   NR XP_068408483.1 9764 g75403 i0 75 0.605042016806723 24 6 30.3 0 237 166 763 786 XP_068408483.1 protein tyrosine phosphatase domain-containing protein 1 isoform X4 [Eschrichtius robustus] diamond 144 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Eschrichtiidae Eschrichtius Eschrichtius robustus
30891955 30891955 PRJNA1126661_P_NODE_50134_length_295_cov_10.445946_g49605_i0 PRJNA1126661 50134 295 10.445946 30.8155407 Capra hircus 9925 Chordata Chordata 53.1 1.44e-5   NR KAJ1067190.1 9925 g49605 i0 84.4 0.325423728813559 32 4 32.5 1 114 19 147 177 KAJ1067190.1 hypothetical protein K5549_017947, partial [Capra hircus] diamond 96 53.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Capra Capra hircus
31112773 31112773 PRJNA1126661_P_NODE_80455_length_223_cov_7.626667_g79925_i0 PRJNA1126661 80455 223 7.626667 17.00746741 Balaenoptera physalus 9770 Chordata Chordata 42.7 0.0145   NR KAB0390319.1 9770 g79925 i0 54.3 0.618834080717489 46 19 61.9 2 158 21 5 48 KAB0390319.1 hypothetical protein E2I00_011631, partial [Balaenoptera physalus] diamond 138 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Balaenopteridae Balaenoptera Balaenoptera physalus
31175862 31175862 PRJNA1126661_P_NODE_55275_length_288_cov_3.274419_g54746_i0 PRJNA1126661 55275 288 3.274419 9.43032672 Ovis ammon polii x Ovis aries 2918886 Chordata Chordata 62 4.97e-9   NR KAI4581403.1 2918886 g54746 i0 71.1 0.395833333333333 38 11 39.6 0 4 117 8 45 KAI4581403.1 hypothetical protein MJG53_009846 [Ovis ammon polii x Ovis aries] diamond 114 62 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Ovis Ovis ammon polii x Ovis aries
31239263 31239263 PRJNA1126661_P_NODE_77135_length_234_cov_4.453416_g76605_i0 PRJNA1126661 77135 234 4.453416 10.42099344 Oryx dammah 59534 Chordata Chordata 43.5 0.0174   NR XP_040110387.1 59534 g76605 i0 71.4 0.358974358974359 28 8 35.9 0 37 120 296 323 XP_040110387.1 putative GPI-anchored protein pfl2 [Oryx dammah] diamond 84 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Oryx Oryx dammah
31302628 31302628 PRJNA1126661_P_NODE_62375_length_272_cov_3.894472_g61845_i0 PRJNA1126661 62375 272 3.894472 10.59296384 Hippopotamus amphibius kiboko 575201 Chordata Chordata 48.1 6.56e-4   NR XP_057566420.1 575201 g61845 i0 45.5 0.970588235294118 88 25 87.1 5 3 239 167 240 XP_057566420.1 putative proline-rich protein 21 [Hippopotamus amphibius kiboko] diamond 264 48.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Hippopotamidae Hippopotamus Hippopotamus amphibius
31713826 31713826 PRJNA1126661_P_NODE_88397_length_198_cov_4.992000_g87867_i0 PRJNA1126661 88397 198 4.992 9.88416 Crocuta crocuta 9678 Chordata Chordata 47 1.73e-4   NR KAF0874406.1 9678 g87867 i0 48.1 1.5 52 26 77.3 1 4 156 18 69 KAF0874406.1 LORF2 protein, partial [Crocuta crocuta] diamond 297 47 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Hyaenidae Crocuta Crocuta crocuta
31903552 31903552 PRJNA1126661_P_NODE_87717_length_199_cov_10.222222_g87187_i0 PRJNA1126661 87717 199 10.222222 20.34222178 Rhinolophus ferrumequinum 59479 Chordata Chordata 59.7 1.41e-8   NR KAF6357120.1 59479 g87187 i0 51.9 0.814070351758794 54 26 81.4 0 36 197 21 74 KAF6357120.1 hypothetical protein mRhiFer1_010041 [Rhinolophus ferrumequinum] diamond 162 59.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Rhinolophidae Rhinolophus Rhinolophus ferrumequinum
32568314 32568314 PRJNA1126661_P_NODE_70919_length_251_cov_2.556180_g70389_i0 PRJNA1126661 70919 251 2.55618 6.4160118 Varanus komodoensis 61221 Chordata Chordata 45.1 0.00589   NR KAF7248269.1 61221 g70389 i0 46.6 0.693227091633466 58 27 68.1 2 28 198 55 109 KAF7248269.1 Cytoplasmic polyadenylation element-binding protein 2 [Varanus komodoensis] diamond 174 45.1 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Varanidae Varanus Varanus komodoensis
32630834 32630834 PRJNA1126661_P_NODE_66640_length_262_cov_2.365079_g66110_i0 PRJNA1126661 66640 262 2.365079 6.19650698 Peromyscus californicus insignis 564181 Chordata Chordata 45.1 0.00676   NR XP_052571014.1 564181 g66110 i0 61.3 0.652671755725191 31 11 34.4 1 90 1 123 153 XP_052571014.1 uncharacterized protein LOC128096006 [Peromyscus californicus insignis] diamond 171 45.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Peromyscus Peromyscus californicus
32662309 32662309 PRJNA1126661_P_NODE_52320_length_293_cov_4.704545_g51791_i0 PRJNA1126661 52320 293 4.704545 13.78431685 Phyllostomus discolor 89673 Chordata Chordata 42.4 0.0448   NR KAF6109569.1 89673 g51791 i0 46.3 0.419795221843003 41 22 42 0 143 21 66 106 KAF6109569.1 hypothetical protein HJG60_010837 [Phyllostomus discolor] diamond 123 42.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Phyllostomidae Phyllostomus Phyllostomus discolor

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;