RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

13 rows where analysis = "diamond", bioproject = "PRJNA1126661" and tax_kingdom = "Thermotogati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 13 ✖

bioproject 1

  • PRJNA1126661 · 13 ✖

analysis 1

  • diamond · 13 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27006907 27006907 PRJNA1126661_P_NODE_73282_length_245_cov_2.720930_g72752_i0 PRJNA1126661 73282 245 2.72093 6.6662785 Deinococcus terrestris 2651870 Bacteria Bacteria 79.3 1.68e-16   NR WP_152872352.1 2651870 g72752 i0 79.2 0.648979591836735 53 11 64.9 0 243 85 102 154 WP_152872352.1 hypothetical protein [Deinococcus terrestris] diamond 159 79.3 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus terrestris
27038659 27038659 PRJNA1126661_P_NODE_12442_length_326_cov_5.948617_g11913_i0 PRJNA1126661 12442 326 5.948617 19.39249142 Deinococcus metallilatus 1211322 Bacteria Bacteria 83.6 4.77e-16   NR WP_184117631.1 1211322 g11913 i0 84 0.460122699386503 50 8 46 0 150 1 795 844 WP_184117631.1 S8 family serine peptidase [Deinococcus metallilatus] diamond 150 83.6 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus metallilatus
28333575 28333575 PRJNA1126661_P_NODE_13066_length_326_cov_5.703557_g12537_i0 PRJNA1126661 13066 326 5.703557 18.59359582 Deinococcus reticulitermitis 856736 Bacteria Bacteria 90.5 5.84e-20   NR WP_092265365.1 856736 g12537 i0 98 0.450920245398773 49 1 45.1 0 2 148 102 150 WP_092265365.1 GNAT family N-acetyltransferase [Deinococcus reticulitermitis] diamond 147 90.5 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus reticulitermitis
28554802 28554802 PRJNA1126661_P_NODE_46267_length_299_cov_3.469027_g45738_i0 PRJNA1126661 46267 299 3.469027 10.37239073 Deinococcus antarcticus 1298767 Bacteria Bacteria 145 7.27e-41   NR WP_380080776.1 1298767 g45738 i0 66.2 1.48494983277592 148 1 99.3 1 2 298 13 160 WP_380080776.1 ABC transporter permease [Deinococcus antarcticus] diamond 444 145 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus antarcticus
29627700 29627700 PRJNA1126661_P_NODE_83490_length_212_cov_5.561151_g82960_i0 PRJNA1126661 83490 212 5.561151 11.78964012 Fervidobacterium sp. 1871331 Bacteria Bacteria 135 7.36e-35   NR MDM7321419.1 1871331 g82960 i0 95.7 1.9811320754717 70 3 99.1 0 1 210 350 419 MDM7321419.1 hypothetical protein [Fervidobacterium sp.] diamond 420 135 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Fervidobacterium Fervidobacterium sp.
30217316 30217316 PRJNA1126661_P_NODE_12812_length_326_cov_5.790514_g12283_i0 PRJNA1126661 12812 326 5.790514 18.87707564 Cyanobacteriota/Melainabacteria group 1798711 Bacteria Bacteria 68.9 6.02e-11   NR WP_110832980.1 1452751 g12283 i0 71.7 6.67177914110429 46 13 42.3 0 14 151 224 269 WP_110832980.1 SulP family inorganic anion transporter [Deinococcus arenae] diamond 2175 68.9 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus arenae
30638889 30638889 PRJNA1126661_P_NODE_33753_length_301_cov_8.482456_g33224_i0 PRJNA1126661 33753 301 8.4824560000000009 25.53219256 Deinococcus budaensis 1665626 Bacteria Bacteria 127 1.83e-32   NR WP_184027715.1 1665626 g33224 i0 48.9 1.79401993355482 180 10 99.7 2 1 300 189 366 WP_184027715.1 bifunctional DNA primase/polymerase [Deinococcus budaensis] diamond 540 127 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus budaensis
30670554 30670554 PRJNA1126661_P_NODE_56813_length_285_cov_2.051887_g56284_i0 PRJNA1126661 56813 285 2.051887 5.84787795 Deinococcus piscis 394230 Bacteria Bacteria 131 1.67e-33   NR WP_189642827.1 394230 g56284 i0 64.9 1.95789473684211 94 33 98.9 0 2 283 5 98 WP_189642827.1 type I-E CRISPR-associated protein Cse1/CasA [Deinococcus piscis] diamond 558 131 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus piscis
31492582 31492582 PRJNA1126661_P_NODE_30716_length_325_cov_8.726190_g30187_i0 PRJNA1126661 30716 325 8.72619 28.3601175 Deinococcus antarcticus 1298767 Bacteria Bacteria 102 7.969999999999999e-23   NR WP_380076961.1 1298767 g30187 i0 96 0.461538461538462 50 2 46.2 0 1 150 417 466 WP_380076961.1 AAA family ATPase [Deinococcus antarcticus] diamond 150 102 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus antarcticus
31524178 31524178 PRJNA1126661_P_NODE_9496_length_326_cov_7.679842_g8967_i0 PRJNA1126661 9496 326 7.679842 25.03628492 Trueperaceae bacterium 2026798 Bacteria Bacteria 82 1.34e-15   NR MBA2666949.1 2026798 g8967 i0 81.6 0.450920245398773 49 9 45.1 0 150 4 320 368 MBA2666949.1 glutamate-5-semialdehyde dehydrogenase [Trueperaceae bacterium] diamond 147 82 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae   Trueperaceae bacterium
31871886 31871886 PRJNA1126661_P_NODE_10397_length_326_cov_7.027668_g9868_i0 PRJNA1126661 10397 326 7.027668 22.91019768 Deinococcota bacterium 1913990 Bacteria Bacteria 73.6 3.64e-13   NR MDQ3398935.1 1913990 g9868 i0 71.7 0.423312883435583 46 13 42.3 0 189 326 33 78 MDQ3398935.1 PRTRC system protein B [Deinococcota bacterium] diamond 138 73.6 1 Bacteria   Thermotogati Deinococcota         Deinococcota bacterium
32409946 32409946 PRJNA1126661_P_NODE_20599_length_326_cov_3.826087_g20070_i0 PRJNA1126661 20599 326 3.826087 12.47304362 Truepera radiovictrix 332249 Bacteria Bacteria 92.8 8.14e-20   NR WP_013176809.1 332249 g20070 i0 85.7 0.450920245398773 49 7 45.1 0 178 324 49 97 WP_013176809.1 aspartate-semialdehyde dehydrogenase [Truepera radiovictrix] diamond 147 92.8 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera Truepera radiovictrix
32599622 32599622 PRJNA1126661_P_NODE_16760_length_326_cov_4.588933_g16231_i0 PRJNA1126661 16760 326 4.588933 14.95992158 Truepera radiovictrix 332249 Bacteria Bacteria 50.8 1.39e-4   NR WP_013178264.1 332249 g16231 i0 54 0.460122699386503 50 23 46 0 325 176 565 614 WP_013178264.1 ribosomal protection-like ABC-F family protein [Truepera radiovictrix] diamond 150 50.8 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera Truepera radiovictrix

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;