RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1126661" and tax_clade = "Stenosarchaea group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 3 ✖

bioproject 1

  • PRJNA1126661 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26848969 26848969 PRJNA1126661_P_NODE_32121_length_316_cov_4.757202_g31592_i0 PRJNA1126661 32121 316 4.757202 15.03275832 Methanococcoides methylutens 2226 Archaea Archaea 140 6.15e-37   NR WP_052721412.1 2226 g31592 i0 49.7 2.59177215189873 143 34 99.7 1 1 315 179 321 WP_052721412.1 VWA domain-containing protein [Methanococcoides methylutens] diamond 819 140 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanococcoides Methanococcoides methylutens
32851378 32851378 PRJNA1126661_P_NODE_18960_length_326_cov_4.106719_g18431_i0 PRJNA1126661 18960 326 4.106719 13.38790394 Candidatus Methanoperedens sp. 2032688 Archaea Archaea 99 1.63e-21   NR HWR97819.1 2032688 g18431 i0 87.8 0.450920245398773 49 6 45.1 0 178 324 143 191 HWR97819.1 ammonia-forming cytochrome c nitrite reductase subunit c552 [Candidatus Methanoperedens sp.] diamond 147 99 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Candidatus Methanoperedentaceae Candidatus Methanoperedens Candidatus Methanoperedens sp.
32851395 32851395 PRJNA1126661_P_NODE_73180_length_245_cov_4.197674_g72650_i0 PRJNA1126661 73180 245 4.197674 10.2843013 Haladaptatus caseinilyticus 2993314 Archaea Archaea 81.6 3.58e-16   NR WP_266081598.1 2993314 g72650 i0 52.9 0.857142857142857 70 32 85.7 1 211 2 149 217 WP_266081598.1 hypothetical protein [Haladaptatus caseinilyticus] diamond 210 81.6 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haladaptataceae Haladaptatus Haladaptatus caseinilyticus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;