RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1126661" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA1126661 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27533349 27533349 PRJNA1126661_P_NODE_16603_length_326_cov_4.624506_g16074_i0 PRJNA1126661 16603 326 4.624506 15.07588956 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 51.2 9.4e-5   NR KAH3745955.1 1580589 g16074 i0 46.9 4.4079754601227 49 24 45.1 1 180 326 243 289 KAH3745955.1 hypothetical protein Pelo_12636 [Pelomyxa schiedti] diamond 1437 51.2 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
31081489 31081489 PRJNA1126661_P_NODE_9335_length_326_cov_7.845850_g8806_i0 PRJNA1126661 9335 326 7.84585 25.577471 Tieghemostelium lacteum 361077 Evosea other_Eukaryota 55.1 4.3e-6   NR KYQ96866.1 361077 g8806 i0 51.1 0.414110429447853 45 22 41.4 0 311 177 120 164 KYQ96866.1 oxysterol binding family protein [Tieghemostelium lacteum] diamond 135 55.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum
31366083 31366083 PRJNA1126661_P_NODE_29896_length_326_cov_2.569170_g29367_i0 PRJNA1126661 29896 326 2.56917 8.3754942 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 78.2 3.67e-14   NR PRP75013.1 1890364 g29367 i0 65.3 0.450920245398773 49 17 45.1 0 178 324 449 497 PRP75013.1 hypothetical protein PROFUN_07406 [Planoprotostelium fungivorum] diamond 147 78.2 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;