RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1126198" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1126198 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2305941 2305941 PRJNA1126198_P_NODE_97742_length_344_cov_1.726937_g97024_i0 PRJNA1126198 97742 344 1.726937 5.94066328 Acrasis kona 1008807 Heterolobosea other_Eukaryota 128 7.05e-33   NR KAL0489302.1 1008807 g97024 i0 55.2 3.02616279069767 116 49 98.5 1 343 5 69 184 KAL0489302.1 quercetin 2,3-dioxygenase [Acrasis kona] diamond 1041 128 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
30765405 30765405 PRJNA1126198_P_NODE_492774_length_227_cov_2.025974_g492052_i0 PRJNA1126198 492774 227 2.025974 4.59896098 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 48.5 2.83e-4   NR XP_002679874.1 5762 g492052 i0 38.5 0.859030837004405 65 39 85.9 1 2 196 374 437 XP_002679874.1 serine/threonine protein kinase [Naegleria gruberi] diamond 195 48.5 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
31018190 31018190 PRJNA1126198_P_NODE_310435_length_263_cov_1.642105_g309714_i0 PRJNA1126198 310435 263 1.642105 4.31873615 Acrasis kona 1008807 Heterolobosea other_Eukaryota 43.9 0.0149   NR KAL0490557.1 1008807 g309714 i0 32.4 0.775665399239544 68 40 77.6 1 216 13 85 146 KAL0490557.1 hypothetical protein AKO1_003036 [Acrasis kona] diamond 204 43.9 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
32093376 32093376 PRJNA1126198_P_NODE_240878_length_280_cov_2.280193_g240157_i0 PRJNA1126198 240878 280 2.280193 6.3845404 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 153 5.829999999999998e-42   NR XP_002670363.1 5762 g240157 i0 73.1 1.99285714285714 93 25 99.6 0 2 280 343 435 XP_002670363.1 chaperonin complex component, TCP-1 beta subunit [Naegleria gruberi] diamond 558 153 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;