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contig_metadata

32 rows where analysis = "diamond", bioproject = "PRJNA1126198" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 32 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1126198 · 32 ✖

analysis 1

  • diamond · 32 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2831754 2831754 PRJNA1126198_P_NODE_133383_length_321_cov_5.157258_g132664_i0 PRJNA1126198 133383 321 5.157258 16.55479818 Oikopleura dioica 34765 Chordata Chordata 96.7 6.3e-23   NR CAG5109510.1 34765 g132664 i0 58.4 1.4392523364486 77 32 72 0 89 319 13 89 CAG5109510.1 Oidioi.mRNA.OKI2018_I69.chr2.g4037.t1.cds [Oikopleura dioica] diamond 462 96.7 1 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica
5385068 5385068 PRJNA1126198_P_NODE_60165_length_382_cov_2.019417_g59448_i0 PRJNA1126198 60165 382 2.019417 7.71417294 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 165 1.9e-46   NR KAG8443529.1 247094 g59448 i0 70.4 3.92670157068063 125 37 98.2 0 375 1 232 356 KAG8443529.1 hypothetical protein GDO86_012074 [Hymenochirus boettgeri] diamond 1500 166 0.993975903614458 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Hymenochirus Hymenochirus boettgeri
7934371 7934371 PRJNA1126198_P_NODE_287967_length_268_cov_2.323077_g287246_i0 PRJNA1126198 287967 268 2.323077 6.22584636 Metazoa 33208 Chordata Chordata 136 2.889999999999999e-38   NR XP_067963133.1 7769 g287246 i0 72.1 76.0522388059701 86 24 96.3 0 267 10 27 112 XP_067963133.1 ras-related protein Rab-21 isoform X2 [Myxine glutinosa] diamond 20382 136 1 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
9958286 9958286 PRJNA1126198_P_NODE_12448_length_557_cov_5.444215_g11769_i0 PRJNA1126198 12448 557 5.444215 30.32427755 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 212 1.18e-66   NR XP_032836657.1 7757 g11769 i0 64.3 37.3734290843806 157 55 84.6 1 557 87 31 186 XP_032836657.1 40S ribosomal protein S18 isoform X1 [Petromyzon marinus] diamond 20817 214 0.990654205607477 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Petromyzon Petromyzon marinus
11760483 11760483 PRJNA1126198_P_NODE_76010_length_363_cov_3.782759_g75293_i0 PRJNA1126198 76010 363 3.782759 13.73141517 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 114 2.39e-29   NR CAL5930697.1 7748 g75293 i0 64.3 11.1074380165289 84 30 69.4 0 72 323 60 143 CAL5930697.1 unnamed protein product [Lampetra fluviatilis] diamond 4032 114 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
14310117 14310117 PRJNA1126198_P_NODE_222332_length_286_cov_1.084507_g221611_i0 PRJNA1126198 222332 286 1.084507 3.10169002 Opisthokonta 33154 Chordata Chordata 159 8.05e-44   NR ETE73729.1 8665 g221611 i0 74.7 34.8671328671329 95 24 99.7 0 1 285 410 504 ETE73729.1 Aspartyl-tRNA synthetase, cytoplasmic, partial [Ophiophagus hannah] diamond 9972 159 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Elapidae Ophiophagus Ophiophagus hannah
24507068 24507068 PRJNA1126198_P_NODE_16280_length_518_cov_9.260674_g15593_i0 PRJNA1126198 16280 518 9.260674 47.97029132 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 139 1.32e-38   NR CAB3265748.1 59560 g15593 i0 49 10.3552123552124 143 63 82.8 1 477 49 5 137 CAB3265748.1 40S ribosomal protein S12-like [Phallusia mammillata] diamond 5364 139 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Ascidiidae Phallusia Phallusia mammillata
26721686 26721686 PRJNA1126198_P_NODE_428121_length_246_cov_0.895954_g427400_i0 PRJNA1126198 428121 246 0.895954 2.20404684 Nipponia nippon 128390 Chordata Chordata 43.1 0.0135   NR XP_009460465.1 128390 g427400 i0 46.3 0.658536585365854 54 24 59.8 1 162 16 36 89 XP_009460465.1 PREDICTED: synaptonemal complex central element protein 2 [Nipponia nippon] diamond 162 43.1 1 Eukaryota Opisthokonta Metazoa Chordata Aves Pelecaniformes Threskiornithidae Nipponia Nipponia nippon
27122293 27122293 PRJNA1126198_P_NODE_31902_length_440_cov_12.128065_g31193_i0 PRJNA1126198 31902 440 12.128065 53.363486 Opisthokonta 33154 Chordata Chordata 168 7.5400000000000006e-51   NR XP_035667477.1 7739 g31193 i0 69.5 41.5022727272727 118 36 80.5 0 420 67 1 118 XP_035667477.1 40S ribosomal protein S17 [Branchiostoma floridae] diamond 18261 168 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
27354928 27354928 PRJNA1126198_P_NODE_362363_length_253_cov_0.866667_g361642_i0 PRJNA1126198 362363 253 0.866667 2.19266751 Ailuropoda melanoleuca 9646 Chordata Chordata 45.1 7.77e-4   NR EFB17980.1 9646 g361642 i0 53.1 0.58102766798419 49 21 56.9 2 186 43 23 70 EFB17980.1 hypothetical protein PANDA_008628, partial [Ailuropoda melanoleuca] diamond 147 45.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Ursidae Ailuropoda Ailuropoda melanoleuca
27891393 27891393 PRJNA1126198_P_NODE_28385_length_452_cov_3.986807_g27681_i0 PRJNA1126198 28385 452 3.986807 18.02036764 Camelus ferus 419612 Chordata Chordata 52.8 2.38e-5   NR XP_032341591.1 419612 g27681 i0 32.7 0.710176991150443 107 69 71 1 102 422 41 144 XP_032341591.1 translocon-associated protein subunit gamma isoform X2 [Camelus ferus] diamond 321 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Camelidae Camelus Camelus ferus
27891408 27891408 PRJNA1126198_P_NODE_461405_length_243_cov_0.900000_g460684_i0 PRJNA1126198 461405 243 0.9 2.187 Mycteria americana 33587 Chordata Chordata 46.2 0.002   NR KAK4829098.1 33587 g460684 i0 59.5 0.518518518518518 42 16 50.6 1 2 124 95 136 KAK4829098.1 hypothetical protein QYF61_002049 [Mycteria americana] diamond 126 46.2 1 Eukaryota Opisthokonta Metazoa Chordata Aves Ciconiiformes Ciconiidae Mycteria Mycteria americana
28049395 28049395 PRJNA1126198_P_NODE_361305_length_253_cov_0.866667_g360584_i0 PRJNA1126198 361305 253 0.866667 2.19266751 Latimeria chalumnae 7897 Chordata Chordata 49.7 1.42e-4   NR XP_006008999.1 7897 g360584 i0 70.6 2.89328063241107 34 10 40.3 0 241 140 244 277 XP_006008999.1 sphingolipid delta(4)-desaturase DES1 [Latimeria chalumnae] diamond 732 49.7 1 Eukaryota Opisthokonta Metazoa Chordata   Coelacanthiformes Coelacanthidae Latimeria Latimeria chalumnae
28133406 28133406 PRJNA1126198_P_NODE_302165_length_265_cov_1.604167_g301444_i0 PRJNA1126198 302165 265 1.604167 4.25104255 Chordata 7711 Chordata Chordata 150 1.22e-40   NR XP_042692974.1 9002 g301444 i0 73.9 157.981132075472 88 23 99.6 0 1 264 417 504 XP_042692974.1 tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X6 [Centrocercus urophasianus] diamond 41865 151 0.993377483443709 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Centrocercus Centrocercus urophasianus
28144343 28144343 PRJNA1126198_P_NODE_313625_length_262_cov_2.772487_g312904_i0 PRJNA1126198 313625 262 2.772487 7.26391594 Gallus gallus 9031 Chordata Chordata 62.8 3.85e-9   NR XP_046757526.1 9031 g312904 i0 54.2 1.64885496183206 72 32 82.4 1 43 258 269 339 XP_046757526.1 translation initiation factor IF-2-like [Gallus gallus] diamond 432 62.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
28512140 28512140 PRJNA1126198_P_NODE_269967_length_273_cov_1.280000_g269246_i0 PRJNA1126198 269967 273 1.28 3.4944 Metazoa 33208 Chordata Chordata 60.1 4.27e-8   NR XP_020642024.1 103695 g269246 i0 47.8 18.6043956043956 67 34 73.6 1 43 243 485 550 XP_020642024.1 tyrosine-protein kinase RYK, partial [Pogona vitticeps] diamond 5079 60.5 0.993388429752066 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Agamidae Pogona Pogona vitticeps
28512145 28512145 PRJNA1126198_P_NODE_426627_length_246_cov_0.901734_g425906_i0 PRJNA1126198 426627 246 0.901734 2.21826564 root 1 Root_unresolved Root_unresolved 117 2.7699999999999993e-28   NR XP_007895547.2 7868 g425906 i0 74 21.8292682926829 77 20 93.9 0 3 233 155 231 XP_007895547.2 peroxisomal multifunctional enzyme type 2 [Callorhinchus milii] diamond 5370 117 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Chimaeriformes Callorhinchidae Callorhinchus Callorhinchus milii
28965207 28965207 PRJNA1126198_P_NODE_214488_length_288_cov_1.432558_g213767_i0 PRJNA1126198 214488 288 1.432558 4.12576704 Onychorhynchus coronatus 360224 Chordata Chordata 52.4 2.54e-5   NR NWU82235.1 360224 g213767 i0 37.2 3.41666666666667 86 39 74 1 71 283 485 570 NWU82235.1 CND2 protein [Onychorhynchus coronatus] diamond 984 52.4 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Tyrannidae Onychorhynchus Onychorhynchus coronatus
29280651 29280651 PRJNA1126198_P_NODE_81229_length_358_cov_1.810526_g80512_i0 PRJNA1126198 81229 358 1.810526 6.48168308 Rana temporaria 8407 Chordata Chordata 151 1.1099999999999999e-39   NR XP_040183564.1 8407 g80512 i0 62.4 3.93016759776536 117 44 98 0 356 6 328 444 XP_040183564.1 aldehyde dehydrogenase family 16 member A1 [Rana temporaria] diamond 1407 151 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Rana Rana temporaria
29596188 29596188 PRJNA1126198_P_NODE_306710_length_264_cov_1.602094_g305989_i0 PRJNA1126198 306710 264 1.602094 4.22952816 Manis javanica 9974 Chordata Chordata 85.9 3.26e-17   NR XP_017501181.2 9974 g305989 i0 59.1 12 88 36 100 0 264 1 222 309 XP_017501181.2 LOW QUALITY PROTEIN: heat shock 70 kDa protein 6 [Manis javanica] diamond 3168 86.3 0.995365005793743 Eukaryota Opisthokonta Metazoa Chordata Mammalia Pholidota Manidae Manis Manis javanica
30059240 30059240 PRJNA1126198_P_NODE_188831_length_297_cov_0.861607_g188111_i0 PRJNA1126198 188831 297 0.861607 2.55897279 Metazoa 33208 Chordata Chordata 101 1.29e-24   NR XP_070730627.1 55135 g188111 i0 54.7 8.7979797979798 86 39 86.9 0 1 258 84 169 XP_070730627.1 aldo-keto reductase family 1 member D1-like [Pristiophorus japonicus] diamond 2613 102 0.990196078431373 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes   Pristiophoridae Pristiophorus Pristiophorus japonicus
30765395 30765395 PRJNA1126198_P_NODE_442574_length_244_cov_1.812865_g441853_i0 PRJNA1126198 442574 244 1.812865 4.4233906 Apteryx rowi 308060 Chordata Chordata 94 2.63e-21   NR XP_025930629.1 308060 g441853 i0 54.3 5.97540983606557 81 36 98.4 1 242 3 10 90 XP_025930629.1 protein SEC13 homolog isoform X2 [Apteryx rowi] diamond 1458 94 1 Eukaryota Opisthokonta Metazoa Chordata Aves Apterygiformes Apterygidae Apteryx Apteryx rowi
30786089 30786089 PRJNA1126198_P_NODE_93154_length_348_cov_1.134545_g92436_i0 PRJNA1126198 93154 348 1.134545 3.9482166 Metazoa 33208 Chordata Chordata 181 7.44e-52   NR DBA26576.1 30357 g92436 i0 68.7 88.2327586206897 115 36 99.1 0 2 346 314 428 DBA26576.1 TPA: hypothetical protein GDO54_010817 [Pyxicephalus adspersus] diamond 30705 182 0.994505494505495 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pyxicephalidae Pyxicephalus Pyxicephalus adspersus
31050065 31050065 PRJNA1126198_P_NODE_478255_length_237_cov_2.658537_g477534_i0 PRJNA1126198 478255 237 2.658537 6.30073269 Amblyraja radiata 386614 Chordata Chordata 60.1 2.77e-8   NR XP_032888959.1 386614 g477534 i0 57.1 2.0379746835443 56 23 69.6 1 73 237 800 855 XP_032888959.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116980627 [Amblyraja radiata] diamond 483 60.1 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Rajiformes Rajidae Amblyraja Amblyraja radiata
31081426 31081426 PRJNA1126198_P_NODE_202675_length_292_cov_1.036530_g201955_i0 PRJNA1126198 202675 292 1.03653 3.0266676 Eschrichtius robustus 9764 Chordata Chordata 48.1 1.1e-4   NR MBV97366.1 9764 g201955 i0 73.1 2.4041095890411 26 7 26.7 0 291 214 68 93 MBV97366.1 Histone deacetylase complex subunit SAP18 [Eschrichtius robustus] diamond 702 48.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Eschrichtiidae Eschrichtius Eschrichtius robustus
31681923 31681923 PRJNA1126198_P_NODE_122777_length_327_cov_3.090551_g122058_i0 PRJNA1126198 122777 327 3.090551 10.10610177 Oikopleura dioica 34765 Chordata Chordata 53.1 2.04e-5   NR CBY13109.1 34765 g122058 i0 56.4 0.706422018348624 39 17 35.8 0 121 5 121 159 CBY13109.1 unnamed protein product [Oikopleura dioica] diamond 231 53.1 1 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica
31966723 31966723 PRJNA1126198_P_NODE_306538_length_264_cov_1.612565_g305817_i0 PRJNA1126198 306538 264 1.612565 4.2571716 Ranitomeya imitator 111125 Chordata Chordata 50.8 7e-5   NR CAJ0954523.1 111125 g305817 i0 59.1 1.94318181818182 44 18 50 0 135 4 314 357 CAJ0954523.1 unnamed protein product [Ranitomeya imitator] diamond 513 50.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
31966733 31966733 PRJNA1126198_P_NODE_389158_length_250_cov_0.870056_g388437_i0 PRJNA1126198 389158 250 0.870056 2.17514 Rousettus aegyptiacus 9407 Chordata Chordata 51.2 1.95e-5   NR KAF6465923.1 9407 g388437 i0 48 1.176 50 25 60 1 250 101 122 170 KAF6465923.1 hypothetical protein HJG63_011288 [Rousettus aegyptiacus] diamond 294 51.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Pteropodidae Rousettus Rousettus aegyptiacus
32114308 32114308 PRJNA1126198_P_NODE_347298_length_255_cov_1.824176_g346577_i0 PRJNA1126198 347298 255 1.824176 4.6516488 Opisthokonta 33154 Chordata Chordata 92.4 1.16e-19   NR XP_025907487.1 30464 g346577 i0 58.3 30.6352941176471 84 33 98.8 1 3 254 161 242 XP_025907487.1 proliferation-associated protein 2G4 [Nothoprocta perdicaria] diamond 7812 93.2 0.991416309012876 Eukaryota Opisthokonta Metazoa Chordata Aves Tinamiformes Tinamidae Nothoprocta Nothoprocta perdicaria
32378291 32378291 PRJNA1126198_P_NODE_399419_length_249_cov_0.875000_g398698_i0 PRJNA1126198 399419 249 0.875 2.17875 Ovis ammon polii x Ovis aries 2918886 Chordata Chordata 43.1 0.0147   NR KAI4551670.1 2918886 g398698 i0 52.1 0.578313253012048 48 18 55.4 2 111 248 86 130 KAI4551670.1 hypothetical protein MJT46_017922 [Ovis ammon polii x Ovis aries] diamond 144 43.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Ovis Ovis ammon polii x Ovis aries
32557443 32557443 PRJNA1126198_P_NODE_153599_length_311_cov_1.907563_g152880_i0 PRJNA1126198 153599 311 1.907563 5.93252093 Metazoa 33208 Chordata Chordata 43.5 0.016   NR XP_035660104.1 7739 g152880 i0 29.5 1.54340836012862 78 52 75.2 2 246 13 4 78 XP_035660104.1 sodium/calcium exchanger regulatory protein 1-like [Branchiostoma floridae] diamond 480 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
32788301 32788301 PRJNA1126198_P_NODE_341660_length_256_cov_2.530055_g340939_i0 PRJNA1126198 341660 256 2.530055 6.4769408 Cricetulus griseus 10029 Chordata Chordata 112 7.23e-29   NR EGW00375.1 10029 g340939 i0 70.1 0.90234375 77 23 90.2 0 20 250 51 127 EGW00375.1 hypothetical protein I79_013068 [Cricetulus griseus] diamond 231 112 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;