RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "diamond", bioproject = "PRJNA1126198" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA1126198 · 8 ✖

analysis 1

  • diamond · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4108272 4108272 PRJNA1126198_P_NODE_220404_length_286_cov_1.596244_g219683_i0 PRJNA1126198 220404 286 1.596244 4.56525784 Bacillariophyceae 33849 SAR_Eukaryotes SAR_Eukaryotes 112 1.4600000000000002e-26   NR VEU33857.1 183589 g219683 i0 60 7.17482517482518 85 34 89.2 0 286 32 297 381 VEU33857.1 unnamed protein product [Pseudo-nitzschia multistriata] diamond 2052 113 0.991150442477876 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Pseudo-nitzschia Pseudo-nitzschia multistriata
9209347 9209347 PRJNA1126198_P_NODE_29208_length_449_cov_6.728723_g28502_i0 PRJNA1126198 29208 449 6.728723 30.21196627 Thalassiosira oceanica 159749 SAR_Eukaryotes SAR_Eukaryotes 132 1.25e-36   NR EJK75259.1 159749 g28502 i0 63.1 0.688195991091314 103 37 68.2 1 352 47 9 111 EJK75259.1 hypothetical protein THAOC_03022 [Thalassiosira oceanica] diamond 309 132 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira oceanica
26785625 26785625 PRJNA1126198_P_NODE_35241_length_430_cov_2.764706_g34532_i0 PRJNA1126198 35241 430 2.764706 11.8882358 Seminavis robusta 568900 SAR_Eukaryotes SAR_Eukaryotes 153 4.9e-40   NR CAB9524283.1 568900 g34532 i0 59.9 1.98837209302326 142 56 98.4 1 3 425 598 739 CAB9524283.1 fusing ATPase [Seminavis robusta] diamond 855 153 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Seminavis Seminavis robusta
27607519 27607519 PRJNA1126198_P_NODE_398524_length_249_cov_0.880682_g397803_i0 PRJNA1126198 398524 249 0.880682 2.19289818 Cyclotella cryptica 29204 SAR_Eukaryotes SAR_Eukaryotes 61.6 9.13e-9   NR KAL3779245.1 29204 g397803 i0 38.1 2.02409638554217 84 50 100 2 1 249 577 659 KAL3779245.1 hypothetical protein HJC23_010892 [Cyclotella cryptica] diamond 504 61.6 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclotella Cyclotella cryptica
27891376 27891376 PRJNA1126198_P_NODE_136465_length_320_cov_1.251012_g135746_i0 PRJNA1126198 136465 320 1.251012 4.0032384 Bacillariaceae sp. 3061772 SAR_Eukaryotes SAR_Eukaryotes 53.9 1.07e-5   NR KAL3923562.1 3061772 g135746 i0 38.6 1.78125 83 42 70.3 3 2 226 66 147 KAL3923562.1 MAG: hypothetical protein SGILL_001588 [Bacillariaceae sp.] diamond 570 53.9 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae   Bacillariaceae sp.
27891406 27891406 PRJNA1126198_P_NODE_447505_length_244_cov_0.912281_g446784_i0 PRJNA1126198 447505 244 0.912281 2.22596564 Cyclotella cryptica 29204 SAR_Eukaryotes SAR_Eukaryotes 59.3 4.89e-8   NR KAL3785659.1 29204 g446784 i0 93.1 0.35655737704918 29 2 35.7 0 242 156 325 353 KAL3785659.1 hypothetical protein HJC23_001930 [Cyclotella cryptica] diamond 87 59.3 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclotella Cyclotella cryptica
29123230 29123230 PRJNA1126198_P_NODE_342769_length_256_cov_1.704918_g342048_i0 PRJNA1126198 342769 256 1.704918 4.36459008 Cyclotella cryptica 29204 SAR_Eukaryotes SAR_Eukaryotes 57.4 3.16e-7   NR KAL3799285.1 29204 g342048 i0 66 0.5859375 50 10 51.6 3 145 14 208 256 KAL3799285.1 hypothetical protein HJC23_013010 [Cyclotella cryptica] diamond 150 57.4 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclotella Cyclotella cryptica
30627903 30627903 PRJNA1126198_P_NODE_429293_length_246_cov_0.890173_g428572_i0 PRJNA1126198 429293 246 0.890173 2.18982558 Bacillariophyta 2836 SAR_Eukaryotes SAR_Eukaryotes 60.1 3e-8   NR KAI2509968.1 210448 g428572 i0 37 2.96341463414634 81 51 98.8 0 245 3 328 408 KAI2509968.1 DUF3441-containing protein [Fragilaria crotonensis] diamond 729 60.5 0.993388429752066 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Fragilaria Fragilaria crotonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;