RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1126198" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 3 ✖

bioproject 1

  • PRJNA1126198 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28996937 28996937 PRJNA1126198_P_NODE_398948_length_249_cov_0.875000_g398227_i0 PRJNA1126198 398948 249 0.875 2.17875 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 73.6 5.43e-13   NR XP_013757880.1 461836 g398227 i0 58.1 1.6144578313253 62 25 74.7 1 41 226 360 420 XP_013757880.1 uncharacterized protein AMSG_05471 [Thecamonas trahens ATCC 50062] diamond 402 73.6 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
29249112 29249112 PRJNA1126198_P_NODE_90929_length_350_cov_1.108303_g90211_i0 PRJNA1126198 90929 350 1.108303 3.8790605 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 53.5 2.12e-5   NR XP_013762411.1 461836 g90211 i0 35.8 0.814285714285714 95 61 81.4 0 312 28 772 866 XP_013762411.1 uncharacterized protein AMSG_00680 [Thecamonas trahens ATCC 50062] diamond 285 53.5 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
29344018 29344018 PRJNA1126198_P_NODE_263429_length_274_cov_2.741294_g262708_i0 PRJNA1126198 263429 274 2.741294 7.51114556 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 72.8 5.28e-14   NR XP_013759626.1 461836 g262708 i0 45.3 5.18978102189781 86 46 93.1 1 17 271 4 89 XP_013759626.1 prefoldin subunit 4 [Thecamonas trahens ATCC 50062] diamond 1422 72.8 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;