RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1123686" and tax_superkingdom = "Viruses"

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tax_phylum 2

tax_kingdom 2

tax_superkingdom 1

  • Viruses · 3 ✖

bioproject 1

  • PRJNA1123686 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27164916 27164916 PRJNA1123686_S_NODE_462_length_389_cov_126.688889_g431_i0 PRJNA1123686 462 389 126.688889 492.81977821 Shigella phage SGF3 2608295 Viruses Viruses 70.5 1.28e-12   NR QFG06255.1 2608295 g431 i0 61.6 0.562982005141388 73 28 56.3 0 168 386 36 108 QFG06255.1 hypothetical protein [Shigella phage SGF3] diamond 219 70.5 1 Viruses   Sangervirae Phixviricota Malgrandaviricetes Petitvirales Microviridae Sinsheimervirus Shigella phage SGF3
29564885 29564885 PRJNA1123686_S_NODE_370_length_405_cov_113.492021_g340_i0 PRJNA1123686 370 405 113.492021 459.64268505 Shigella phage SGF3 2608295 Viruses Viruses 79.7 3.77e-16   NR QFG06255.1 2608295 g340 i0 62 0.585185185185185 79 30 58.5 0 238 2 36 114 QFG06255.1 hypothetical protein [Shigella phage SGF3] diamond 237 79.7 1 Viruses   Sangervirae Phixviricota Malgrandaviricetes Petitvirales Microviridae Sinsheimervirus Shigella phage SGF3
31745273 31745273 PRJNA1123686_S_NODE_5917_length_219_cov_496.657895_g5885_i0 PRJNA1123686 5917 219 496.657895 1087.68079005 Caudoviricetes sp. 2832643 Viruses Viruses 43.5 0.00707   NR DAF34307.1 2832643 g5885 i0 43.9 2.3013698630137 57 31 76.7 1 5 172 50 106 DAF34307.1 MAG TPA: cytochrome C6 [Caudoviricetes sp.] diamond 504 43.5 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;