RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1123686" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1123686 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27596649 27596649 PRJNA1123686_S_NODE_11584_length_181_cov_13.855263_g11552_i0 PRJNA1123686 11584 181 13.855263 25.07802603 Metazoa 33208 Platyhelminthes Platyhelminthes 50.4 3.19e-6   NR KAH9283247.1 6210 g11552 i0 78.6 1.95580110497238 28 6 46.4 0 179 96 61 88 KAH9283247.1 Protein transport protein Sec61 subunit beta [Echinococcus granulosus] diamond 354 50.4 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Cyclophyllidea Taeniidae Echinococcus Echinococcus granulosus
28333521 28333521 PRJNA1123686_S_NODE_15026_length_168_cov_2.395683_g14994_i0 PRJNA1123686 15026 168 2.395683 4.02474744 Schistocephalus solidus 70667 Platyhelminthes Platyhelminthes 41.2 0.049   NR VDL99704.1 70667 g14994 i0 56.8 0.785714285714286 44 19 78.6 0 1 132 358 401 VDL99704.1 unnamed protein product [Schistocephalus solidus] diamond 132 41.2 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Schistocephalus Schistocephalus solidus
31418198 31418198 PRJNA1123686_S_NODE_11836_length_180_cov_8.774834_g11804_i0 PRJNA1123686 11836 180 8.774834 15.7947012 Cyclophyllidea 6201 Platyhelminthes Platyhelminthes 47.4 5.16e-5   NR KAH9283247.1 6210 g11804 i0 75 1.96666666666667 28 7 46.7 0 3 86 61 88 KAH9283247.1 Protein transport protein Sec61 subunit beta [Echinococcus granulosus] diamond 354 47.4 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Cyclophyllidea Taeniidae Echinococcus Echinococcus granulosus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;