RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "diamond", bioproject = "PRJNA1123686" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1123686 · 8 ✖

analysis 1

  • diamond · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26647679 26647679 PRJNA1123686_S_NODE_1141_length_324_cov_98.972881_g1109_i0 PRJNA1123686 1141 324 98.972881 320.67213444 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 48.1 4.37e-4   NR KHN88670.1 6265 g1109 i0 37.5 1.05555555555556 64 33 52.8 1 245 75 32 95 KHN88670.1 hypothetical protein Tcan_01693, partial [Toxocara canis] diamond 342 48.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
27512688 27512688 PRJNA1123686_S_NODE_1063_length_329_cov_75.203333_g1031_i0 PRJNA1123686 1063 329 75.203333 247.41896557 Pristionchus fissidentatus 1538716 Nematoda Nematoda 60.8 4.2e-8   NR GMT10606.1 1538716 g1031 i0 41.7 0.875379939209726 96 54 87.5 1 288 1 6 99 GMT10606.1 hypothetical protein PFISCL1PPCAC_1903 [Pristionchus fissidentatus] diamond 288 60.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fissidentatus
27923047 27923047 PRJNA1123686_S_NODE_465_length_389_cov_65.527778_g434_i0 PRJNA1123686 465 389 65.527778 254.90305642 Pristionchus entomophagus 358040 Nematoda Nematoda 63.9 2.11e-10   NR GMT04761.1 358040 g434 i0 52.2 1.06426735218509 69 33 53.2 0 210 4 11 79 GMT04761.1 hypothetical protein PENTCL1PPCAC_26935, partial [Pristionchus entomophagus] diamond 414 63.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus entomophagus
28586348 28586348 PRJNA1123686_S_NODE_5827_length_220_cov_38.926702_g5795_i0 PRJNA1123686 5827 220 38.926702 85.6387444 Pristionchus entomophagus 358040 Nematoda Nematoda 50.1 6.41e-5   NR GMS89268.1 358040 g5795 i0 42.9 0.859090909090909 63 36 85.9 0 191 3 59 121 GMS89268.1 hypothetical protein PENTCL1PPCAC_11443, partial [Pristionchus entomophagus] diamond 189 50.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus entomophagus
29438268 29438268 PRJNA1123686_S_NODE_9250_length_193_cov_13.884146_g9218_i0 PRJNA1123686 9250 193 13.884146 26.79640178 Pristionchus mayeri 1317129 Nematoda Nematoda 53.5 7.65e-7   NR GMR51339.1 1317129 g9218 i0 52.9 0.792746113989637 51 24 79.3 0 36 188 10 60 GMR51339.1 hypothetical protein PMAYCL1PPCAC_21534, partial [Pristionchus mayeri] diamond 153 53.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus mayeri
30355123 30355123 PRJNA1123686_S_NODE_3292_length_254_cov_9.328889_g3260_i0 PRJNA1123686 3292 254 9.328889 23.69537806 Halicephalobus sp. NKZ332 2598192 Nematoda Nematoda 43.1 0.00531   NR KAE9548833.1 2598192 g3260 i0 35.3 0.803149606299213 68 37 74.4 2 38 226 5 70 KAE9548833.1 hypothetical protein FO519_007952 [Halicephalobus sp. NKZ332] diamond 204 43.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Halicephalobus Halicephalobus sp. NKZ332
30891893 30891893 PRJNA1123686_S_NODE_3174_length_256_cov_17.766520_g3142_i0 PRJNA1123686 3174 256 17.76652 45.4822912 Caenorhabditis briggsae 6238 Nematoda Nematoda 52.8 1.14e-6   NR XP_002648286.1 6238 g3142 i0 62.2 3.1640625 45 17 52.7 0 43 177 49 93 XP_002648286.1 Protein CBG24443 [Caenorhabditis briggsae] diamond 810 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
31112708 31112708 PRJNA1123686_S_NODE_2155_length_280_cov_87.665339_g2123_i0 PRJNA1123686 2155 280 87.665339 245.4629492 Pristionchus fissidentatus 1538716 Nematoda Nematoda 49.7 7.07e-5   NR GMT29326.1 1538716 g2123 i0 41.9 0.664285714285714 62 36 66.4 0 276 91 2 63 GMT29326.1 hypothetical protein PFISCL1PPCAC_20623, partial [Pristionchus fissidentatus] diamond 186 49.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fissidentatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;