RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1123436" and tax_phylum = "Thermoproteota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Thermoproteota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1123436 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27291520 27291520 PRJNA1123436_P_NODE_103983_length_248_cov_1.074286_g102769_i0 PRJNA1123436 103983 248 1.074286 2.66422928 Thermoproteota archaeon 2056631 Archaea Archaea 115 7.54e-28   NR RDJ35600.1 2056631 g102769 i0 66.3 0.967741935483871 80 27 96.8 0 244 5 60 139 RDJ35600.1 MAG: hypothetical protein DWQ19_12345 [Thermoproteota archaeon] diamond 240 115 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
27891363 27891363 PRJNA1123436_P_NODE_86685_length_265_cov_2.026042_g85471_i0 PRJNA1123436 86685 265 2.026042 5.3690113 Thermoproteota archaeon 2056631 Archaea Archaea 173 1.06e-51   NR MDP9306616.1 2056631 g85471 i0 95.4 0.984905660377358 87 4 98.5 0 263 3 106 192 MDP9306616.1 nucleotide sugar dehydrogenase [Thermoproteota archaeon] diamond 261 173 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
32188411 32188411 PRJNA1123436_P_NODE_96678_length_251_cov_0.865169_g95464_i0 PRJNA1123436 96678 251 0.865169 2.17157419 Staphylothermus marinus 2280 Archaea Archaea 43.5 0.00548   NR WP_011839246.1 2280 g95464 i0 25.9 1.01593625498008 85 57 94.4 1 245 9 20 104 WP_011839246.1 helix-turn-helix domain-containing protein [Staphylothermus marinus] diamond 255 43.5 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae Staphylothermus Staphylothermus marinus
32851330 32851330 PRJNA1123436_P_NODE_98220_length_250_cov_0.870056_g97006_i0 PRJNA1123436 98220 250 0.870056 2.17514 Ignisphaera sp. 2268142 Archaea Archaea 92.8 9.22e-20   NR MEM1561276.1 2268142 g97006 i0 56.1 1.98 82 35 98.4 1 3 248 370 450 MEM1561276.1 DNA polymerase [Ignisphaera sp.] diamond 495 92.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae Ignisphaera Ignisphaera sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;