RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA1123436" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1123436 · 5 ✖

analysis 1

  • diamond · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11759244 11759244 PRJNA1123436_P_NODE_90090_length_259_cov_1.408602_g88876_i0 PRJNA1123436 90090 259 1.408602 3.64827918 Bacteria 2 Bacteria Bacteria 163 2.1200000000000001e-44   NR MCL2690240.1 2604142 g88876 i0 90.7 9.96138996138996 86 8 99.6 0 1 258 753 838 MCL2690240.1 DNA mismatch repair protein MutS [Chitinispirillia bacterium] diamond 2580 164 0.99390243902439 Bacteria FCB group Pseudomonadati Fibrobacterota Chitinispirillia       Chitinispirillia bacterium
26911954 26911954 PRJNA1123436_P_NODE_123962_length_242_cov_0.911243_g122748_i0 PRJNA1123436 123962 242 0.911243 2.20520806 Fibrobacter sp. 35828 Bacteria Bacteria 72 1.39e-12   NR NLE01892.1 35828 g122748 i0 69 0.520661157024793 42 13 52.1 0 2 127 315 356 NLE01892.1 DUF362 domain-containing protein [Fibrobacter sp.] diamond 126 72 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.
30070128 30070128 PRJNA1123436_P_NODE_119512_length_243_cov_1.005882_g118298_i0 PRJNA1123436 119512 243 1.005882 2.44429326 Chitinivibrionales bacterium 2663014 Bacteria Bacteria 134 7.189999999999998e-35   NR MBN1984137.1 2663014 g118298 i0 80 6.88888888888889 80 16 98.8 0 241 2 216 295 MBN1984137.1 DUF3883 domain-containing protein [Chitinivibrionales bacterium] diamond 1674 134 1 Bacteria FCB group Pseudomonadati Fibrobacterota Chitinivibrionia Chitinivibrionales     Chitinivibrionales bacterium
30070168 30070168 PRJNA1123436_P_NODE_98592_length_250_cov_0.870056_g97378_i0 PRJNA1123436 98592 250 0.870056 2.17514 Fibrobacter sp. 35828 Bacteria Bacteria 53.9 3.77e-6   NR NLD99924.1 35828 g97378 i0 46.1 1.884 76 35 87.6 2 230 12 153 225 NLD99924.1 flagellin [Fibrobacter sp.] diamond 471 53.9 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.
30596348 30596348 PRJNA1123436_P_NODE_121333_length_243_cov_0.905882_g120119_i0 PRJNA1123436 121333 243 0.905882 2.20129326 Bacteria 2 Bacteria Bacteria 61.6 8.41e-9   NR MDB5049237.1 2052160 g120119 i0 56.3 6.67901234567901 64 28 79 0 2 193 1847 1910 MDB5049237.1 hypothetical protein [Fibrobacterota bacterium] diamond 1623 61.6 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;