RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "diamond", bioproject = "PRJNA1123436" and tax_phylum = "Candidatus Portnoyibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Portnoyibacteriota · 1 ✖

tax_clade 1

bioproject 1

  • PRJNA1123436 · 1 ✖

analysis 1

  • diamond · 1 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28112394 28112394 PRJNA1123436_P_NODE_125845_length_241_cov_0.916667_g124631_i0 PRJNA1123436 125845 241 0.916667 2.20916747 Candidatus Portnoybacteria bacterium CG_4_8_14_3_um_filter_4 2053593 Bacteria Bacteria 60.8 1.43e-8   NR PIW76546.1 1974801 g124631 i0 40.6 1.71784232365145 69 41 85.9 0 209 3 3 71 PIW76546.1 MAG: hypothetical protein CO001_00775 [Candidatus Portnoybacteria bacterium CG_4_8_14_3_um_filter_40_10] diamond 414 60.8 1 Bacteria Bacteria candidate phyla   Candidatus Portnoyibacteriota         Candidatus Portnoybacteria bacterium CG_4_8_14_3_um_filter_40_10

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;