RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "diamond", bioproject = "PRJNA1123436" and tax_phylum = "Candidatus Desantisiibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Desantisiibacteriota · 1 ✖

tax_clade 1

bioproject 1

  • PRJNA1123436 · 1 ✖

analysis 1

  • diamond · 1 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32599542 32599542 PRJNA1123436_P_NODE_118040_length_244_cov_0.900585_g116826_i0 PRJNA1123436 118040 244 0.900585 2.1974274 Candidatus Desantisbacteria bacterium CG23_combo_of_CG 1974550 Bacteria Bacteria 123 1.36e-30   NR PIP42354.1 1974550 g116826 i0 75 1.77049180327869 72 18 88.5 0 2 217 469 540 PIP42354.1 MAG: hypothetical protein COX18_00585 [Candidatus Desantisbacteria bacterium CG23_combo_of_CG06-09_8_20_14_all_40_23] diamond 432 123 1 Bacteria Bacteria candidate phyla   Candidatus Desantisiibacteriota         Candidatus Desantisbacteria bacterium CG23_combo_of_CG06-09_8_20_14_all_40_23

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;