RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1123436" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1123436 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30386578 30386578 PRJNA1123436_P_NODE_119613_length_243_cov_0.905882_g118399_i0 PRJNA1123436 119613 243 0.905882 2.20129326 Mayamaea pseudoterrestris 2872254 SAR_Eukaryotes SAR_Eukaryotes 130 3.77e-33   NR GKY91322.1 2872254 g118399 i0 82.3 0.975308641975309 79 14 97.5 0 2 238 486 564 GKY91322.1 hypothetical protein MPSEU_000104400 [Mayamaea pseudoterrestris] diamond 237 130 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Mayamaea Mayamaea pseudoterrestris
31808663 31808663 PRJNA1123436_P_NODE_95517_length_251_cov_0.865169_g94303_i0 PRJNA1123436 95517 251 0.865169 2.17157419 Phaeodactylum tricornutum CCAP 1 2850 SAR_Eukaryotes SAR_Eukaryotes 92.8 1e-19   NR XP_002180731.1 556484 g94303 i0 79.1 0.800796812749004 67 13 78.9 1 199 2 660 726 XP_002180731.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1] diamond 201 92.8 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
32819872 32819872 PRJNA1123436_P_NODE_124760_length_242_cov_0.911243_g123546_i0 PRJNA1123436 124760 242 0.911243 2.20520806 Stephanodiscus triporus 2934178 SAR_Eukaryotes SAR_Eukaryotes 166 2.2699999999999993e-46   NR KAL3761713.1 2934178 g123546 i0 98.8 0.991735537190083 80 1 99.2 0 2 241 253 332 KAL3761713.1 hypothetical protein ACHAW5_005964 [Stephanodiscus triporus] diamond 240 166 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Stephanodiscus Stephanodiscus triporus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;