RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1123436" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 4 ✖

bioproject 1

  • PRJNA1123436 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28649381 28649381 PRJNA1123436_P_NODE_25727_length_512_cov_1.788155_g24520_i0 PRJNA1123436 25727 512 1.788155 9.1553536 Prymnesium parvum 97485 Haptophyta other_Eukaryota 45.1 0.0182   NR KAL1514668.1 97485 g24520 i0 37.5 0.421875 72 39 39.8 2 248 45 62 131 KAL1514668.1 hypothetical protein AB1Y20_003756 [Prymnesium parvum] diamond 216 45.1 1 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum
29817335 29817335 PRJNA1123436_P_NODE_113711_length_245_cov_0.895349_g112497_i0 PRJNA1123436 113711 245 0.895349 2.19360505 Prymnesium parvum 97485 Haptophyta other_Eukaryota 57 3.47e-7   NR KAL1528691.1 97485 g112497 i0 46.9 0.991836734693878 81 41 96.7 1 242 6 154 234 KAL1528691.1 hypothetical protein AB1Y20_010027 [Prymnesium parvum] diamond 243 57 1 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum
30386593 30386593 PRJNA1123436_P_NODE_60693_length_320_cov_2.469636_g59479_i0 PRJNA1123436 60693 320 2.469636 7.9028352 Emiliania huxleyi CCMP1516 280463 Haptophyta other_Eukaryota 109 1.08e-25   NR XP_005764372.1 280463 g59479 i0 48.3 1.10625 118 49 99.4 1 320 3 264 381 XP_005764372.1 aspartate aminotransferase [Emiliania huxleyi CCMP1516] diamond 354 109 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
31935055 31935055 PRJNA1123436_P_NODE_91377_length_257_cov_1.255435_g90163_i0 PRJNA1123436 91377 257 1.255435 3.22646795 Chrysochromulina tobinii 1460289 Haptophyta other_Eukaryota 110 1.12e-26   NR KOO31236.1 1460289 g90163 i0 65.4 0.945525291828794 81 28 94.6 0 257 15 271 351 KOO31236.1 hypothetical protein Ctob_013751 [Chrysochromulina tobinii] diamond 243 110 1 Eukaryota Haptista   Haptophyta   Prymnesiales Chrysochromulinaceae Chrysochromulina Chrysochromulina tobinii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;