RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1123309" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1123309 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26848859 26848859 PRJNA1123309_P_NODE_56701_length_247_cov_1.787356_g56321_i0 PRJNA1123309 56701 247 1.787356 4.41476932 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 57.4 2.7e-7   NR SPQ99908.1 37360 g56321 i0 39.5 0.983805668016194 81 47 96 1 9 245 1457 1537 SPQ99908.1 unnamed protein product [Plasmodiophora brassicae] diamond 243 57.4 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
27544188 27544188 PRJNA1123309_P_NODE_40344_length_270_cov_1.162437_g39964_i0 PRJNA1123309 40344 270 1.162437 3.1385799 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 89.7 4.53e-20   NR CEO99911.1 37360 g39964 i0 66.1 1.28888888888889 62 21 68.9 0 66 251 4 65 CEO99911.1 hypothetical protein PBRA_007645 [Plasmodiophora brassicae] diamond 348 89.7 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
29869852 29869852 PRJNA1123309_P_NODE_55411_length_248_cov_0.891429_g55031_i0 PRJNA1123309 55411 248 0.891429 2.21074392 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 84.3 8.32e-17   NR SPQ96145.1 37360 g55031 i0 49.4 4.66935483870968 81 39 98 1 244 2 18 96 SPQ96145.1 unnamed protein product [Plasmodiophora brassicae] diamond 1158 84.3 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30607212 30607212 PRJNA1123309_P_NODE_3153_length_791_cov_2.447075_g2854_i0 PRJNA1123309 3153 791 2.447075 19.35636325 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 111 5.91e-24   NR CEO97105.1 37360 g2854 i0 33 2.58280657395702 209 109 79.3 5 637 11 281 458 CEO97105.1 hypothetical protein PBRA_005710 [Plasmodiophora brassicae] diamond 2043 111 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;