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contig_metadata

19 rows where analysis = "diamond", bioproject = "PRJNA1123309" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 19 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1123309 · 19 ✖

analysis 1

  • diamond · 19 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4105207 4105207 PRJNA1123309_P_NODE_21984_length_340_cov_1.250936_g21605_i0 PRJNA1123309 21984 340 1.250936 4.2531824 Phallusia mammillata 59560 Chordata Chordata 152 1.75e-41   NR CAB3267494.1 59560 g21605 i0 66.1 1.95882352941176 112 37 98.8 1 3 338 86 196 CAB3267494.1 UDP-glucose 6-dehydrogenase [Phallusia mammillata] diamond 666 152 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Ascidiidae Phallusia Phallusia mammillata
26975228 26975228 PRJNA1123309_P_NODE_62222_length_244_cov_0.912281_g61842_i0 PRJNA1123309 62222 244 0.912281 2.22596564 Engystomops pustulosus 76066 Chordata Chordata 86.3 1.77e-17   NR KAG8571490.1 76066 g61842 i0 55.4 4.52459016393443 74 33 91 0 12 233 957 1030 KAG8571490.1 hypothetical protein GDO81_011667 [Engystomops pustulosus] diamond 1104 87 0.991954022988506 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
27101730 27101730 PRJNA1123309_P_NODE_36182_length_280_cov_1.270531_g35802_i0 PRJNA1123309 36182 280 1.270531 3.5574868 Phallusia mammillata 59560 Chordata Chordata 77.4 3.5e-15   NR CAB3249045.1 59560 g35802 i0 41.9 0.921428571428571 86 50 92.1 0 264 7 23 108 CAB3249045.1 DNA replication complex GINS protein PSF1 [Phallusia mammillata] diamond 258 77.4 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Ascidiidae Phallusia Phallusia mammillata
27659809 27659809 PRJNA1123309_P_NODE_22024_length_340_cov_0.891386_g21645_i0 PRJNA1123309 22024 340 0.891386 3.0307124 Passeriformes 9126 Chordata Chordata 71.2 4.14e-13   NR NXS23194.1 98133 g21645 i0 45.3 1.51764705882353 86 38 75.9 2 3 260 54 130 NXS23194.1 CALMS protein [Mystacornis crossleyi] diamond 516 71.2 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Timaliidae Mystacornis Mystacornis crossleyi
27975334 27975334 PRJNA1123309_P_NODE_43905_length_261_cov_0.946809_g43525_i0 PRJNA1123309 43905 261 0.946809 2.47117149 Anura 8342 Chordata Chordata 53.1 9.67e-6   NR XP_041429831.1 8355 g43525 i0 44.8 3.14942528735632 67 37 77 0 248 48 311 377 XP_041429831.1 uncharacterized protein LOC121397286 [Xenopus laevis] diamond 822 53.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
28417623 28417623 PRJNA1123309_P_NODE_51846_length_250_cov_1.378531_g51466_i0 PRJNA1123309 51846 250 1.378531 3.4463275 Polypteridae 8289 Chordata Chordata 55.8 9.7e-7   NR XP_051788734.1 27687 g51466 i0 69.4 5.112 36 11 43.2 0 129 22 157 192 XP_051788734.1 E3 SUMO-protein ligase ZBED1-like [Erpetoichthys calabaricus] diamond 1278 55.8 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
28428293 28428293 PRJNA1123309_P_NODE_50606_length_251_cov_0.876404_g50226_i0 PRJNA1123309 50606 251 0.876404 2.19977404 Staurois parvus 386267 Chordata Chordata 61.6 1.38e-10   NR CAI9622145.1 386267 g50226 i0 74.4 0.956175298804781 39 10 46.6 0 250 134 7 45 CAI9622145.1 unnamed protein product [Staurois parvus] diamond 240 61.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
28480581 28480581 PRJNA1123309_P_NODE_60966_length_245_cov_0.906977_g60586_i0 PRJNA1123309 60966 245 0.906977 2.22209365 root 1 Root_unresolved Root_unresolved 88.6 2.89e-19   NR POI22351.1 9083 g60586 i0 60 14.8285714285714 80 32 98 0 2 241 136 215 POI22351.1 hypothetical protein CIB84_013902, partial [Bambusicola thoracicus] diamond 3633 88.6 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Bambusicola Bambusicola thoracicus
28617813 28617813 PRJNA1123309_P_NODE_55607_length_248_cov_0.891429_g55227_i0 PRJNA1123309 55607 248 0.891429 2.21074392 Regulus satrapa 13245 Chordata Chordata 43.9 0.00142   NR NWR50751.1 13245 g55227 i0 47.1 0.616935483870968 51 24 61.7 1 17 169 6 53 NWR50751.1 ZNF85 protein [Regulus satrapa] diamond 153 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Regulidae Regulus Regulus satrapa
29280547 29280547 PRJNA1123309_P_NODE_34269_length_285_cov_0.971698_g33889_i0 PRJNA1123309 34269 285 0.971698 2.7693393 Callorhinchus milii 7868 Chordata Chordata 76.6 7.46e-14   NR XP_042189895.1 7868 g33889 i0 43.9 0.863157894736842 82 45 86.3 1 280 35 747 827 XP_042189895.1 alpha-mannosidase 2 [Callorhinchus milii] diamond 246 76.6 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Chimaeriformes Callorhinchidae Callorhinchus Callorhinchus milii
29806554 29806554 PRJNA1123309_P_NODE_26231_length_315_cov_1.243802_g25851_i0 PRJNA1123309 26231 315 1.243802 3.9179763 Ascidiacea 7713 Chordata Chordata 107 1.73e-24   NR XP_002124785.3 7719 g25851 i0 49 4.80952380952381 100 51 95.2 0 311 12 193 292 XP_002124785.3 unconventional myosin-If [Ciona intestinalis] diamond 1515 107 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
30891835 30891835 PRJNA1123309_P_NODE_51974_length_250_cov_1.124294_g51594_i0 PRJNA1123309 51974 250 1.124294 2.810735 Myxine glutinosa 7769 Chordata Chordata 63.2 2.54e-9   NR XP_067957627.1 7769 g51594 i0 60.4 1.272 53 21 63.6 0 14 172 291 343 XP_067957627.1 tryptophan--tRNA ligase, cytoplasmic isoform X2 [Myxine glutinosa] diamond 318 63.2 1 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
31702879 31702879 PRJNA1123309_P_NODE_54657_length_249_cov_0.886364_g54277_i0 PRJNA1123309 54657 249 0.886364 2.20704636 Chordata 7711 Chordata Chordata 63.5 1.81e-9   NR XP_053568518.1 8345 g54277 i0 58.1 27.8915662650602 62 20 73.5 2 244 62 152 208 XP_053568518.1 calpain-8-like isoform X2 [Bombina bombina] diamond 6945 63.9 0.993740219092332 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bombinatoridae Bombina Bombina bombina
31734311 31734311 PRJNA1123309_P_NODE_44897_length_258_cov_1.491892_g44517_i0 PRJNA1123309 44897 258 1.491892 3.84908136 Metazoa 33208 Chordata Chordata 54.7 2.73e-6   NR XP_065451455.1 8478 g44517 i0 45.5 9.84883720930233 77 42 89.5 0 1 231 75 151 XP_065451455.1 uncharacterized protein LOC135983429 [Chrysemys picta bellii] diamond 2541 54.7 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Emydidae Chrysemys Chrysemys picta
31840043 31840043 PRJNA1123309_P_NODE_13677_length_414_cov_4.146628_g13300_i0 PRJNA1123309 13677 414 4.146628 17.16703992 Staurois parvus 386267 Chordata Chordata 57.8 1.2e-7   NR CAI9533415.1 386267 g13300 i0 40 3.00724637681159 110 47 65.9 4 287 15 1 110 CAI9533415.1 unnamed protein product [Staurois parvus] diamond 1245 57.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
32061653 32061653 PRJNA1123309_P_NODE_43538_length_262_cov_0.883598_g43158_i0 PRJNA1123309 43538 262 0.883598 2.31502676 Xenopus laevis 8355 Chordata Chordata 48.5 4.12e-4   NR XP_041429831.1 8355 g43158 i0 39.5 0.984732824427481 86 52 98.5 0 3 260 342 427 XP_041429831.1 uncharacterized protein LOC121397286 [Xenopus laevis] diamond 258 48.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
32504863 32504863 PRJNA1123309_P_NODE_47199_length_253_cov_0.866667_g46819_i0 PRJNA1123309 47199 253 0.866667 2.19266751 Staurois parvus 386267 Chordata Chordata 50.8 5.03e-6   NR CAI9618608.1 386267 g46819 i0 48.5 0.782608695652174 66 34 78.3 0 21 218 19 84 CAI9618608.1 unnamed protein product [Staurois parvus] diamond 198 50.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
32746165 32746165 PRJNA1123309_P_NODE_11400_length_450_cov_0.899204_g11024_i0 PRJNA1123309 11400 450 0.899204 4.046418 Chordata 7711 Chordata Chordata 49.7 0.00123   NR KAF7250773.1 61221 g11024 i0 59.1 2.36 44 18 29.3 0 12 143 686 729 KAF7250773.1 M-phase phosphoprotein 8 [Varanus komodoensis] diamond 1062 49.7 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Varanidae Varanus Varanus komodoensis
32788224 32788224 PRJNA1123309_P_NODE_59780_length_246_cov_0.901734_g59400_i0 PRJNA1123309 59780 246 0.901734 2.21826564 Podarcis raffonei 65483 Chordata Chordata 42.4 0.0474   NR XP_053220310.1 65483 g59400 i0 35.7 0.682926829268293 56 36 68.3 0 200 33 31 86 XP_053220310.1 5-demethoxyubiquinone hydroxylase, mitochondrial [Podarcis raffonei] diamond 168 42.4 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Lacertidae Podarcis Podarcis raffonei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;