RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1123309" and tax_phylum = "Candidatus Sumerlaeota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Sumerlaeota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1123309 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10481878 10481878 PRJNA1123309_P_NODE_32869_length_288_cov_1.381395_g32489_i0 PRJNA1123309 32869 288 1.381395 3.9784176 Candidatus Sumerlaeaceae bacterium 2315423 Bacteria Bacteria 135 4.55e-35   NR MBX7245183.1 2315423 g32489 i0 64.2 2.96875 95 34 99 0 2 286 347 441 MBX7245183.1 FAD-dependent thymidylate synthase [Candidatus Sumerlaeaceae bacterium] diamond 855 135 1 Bacteria Bacteria candidate phyla   Candidatus Sumerlaeota Candidatus Sumerlaeia Candidatus Sumerlaeales Candidatus Sumerlaeaceae   Candidatus Sumerlaeaceae bacterium
28523053 28523053 PRJNA1123309_P_NODE_66647_length_242_cov_0.923077_g66267_i0 PRJNA1123309 66647 242 0.923077 2.23384634 Candidatus Sumerlaea chitinivorans 2250252 Bacteria Bacteria 51.6 2.68e-5   NR AXA35498.1 2250252 g66267 i0 62.2 0.557851239669422 45 16 54.5 1 134 3 174 218 AXA35498.1 N-acetylmuramoyl-L-alanine amidase [Candidatus Sumerlaea chitinivorans] diamond 135 51.6 1 Bacteria Bacteria candidate phyla   Candidatus Sumerlaeota Candidatus Sumerlaeia Candidatus Sumerlaeales Candidatus Sumerlaeaceae Candidatus Sumerlaea Candidatus Sumerlaea chitinivorans
31524049 31524049 PRJNA1123309_P_NODE_55636_length_248_cov_0.891429_g55256_i0 PRJNA1123309 55636 248 0.891429 2.21074392 Candidatus Sumerlaeaceae bacterium 2315423 Bacteria Bacteria 119 1.07e-29   NR MCX7717181.1 2315423 g55256 i0 69.5 0.991935483870968 82 25 99.2 0 246 1 196 277 MCX7717181.1 dihydrolipoyl dehydrogenase [Candidatus Sumerlaeaceae bacterium] diamond 246 119 1 Bacteria Bacteria candidate phyla   Candidatus Sumerlaeota Candidatus Sumerlaeia Candidatus Sumerlaeales Candidatus Sumerlaeaceae   Candidatus Sumerlaeaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;