RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA1123309" and tax_phylum = "Annelida"

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tax_superkingdom 1

tax_phylum 1

  • Annelida · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1123309 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
278487 278487 PRJNA1123309_P_NODE_46121_length_255_cov_1.252747_g45741_i0 PRJNA1123309 46121 255 1.252747 3.19450485 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 155 3.5399999999999992e-43   NR CAH1783597.1 6347 g45741 i0 89.4 25.9882352941176 85 9 100 0 255 1 21 105 CAH1783597.1 unnamed protein product [Owenia fusiformis] diamond 6627 155 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Sabellida Oweniidae Owenia Owenia fusiformis
10481670 10481670 PRJNA1123309_P_NODE_14809_length_401_cov_0.865854_g14432_i0 PRJNA1123309 14809 401 0.865854 3.47207454 Owenia fusiformis 6347 Annelida Annelida 150 2.93e-39   NR CAH1789021.1 6347 g14432 i0 52.7 6.59850374064838 148 54 99.5 4 3 401 465 611 CAH1789021.1 unnamed protein product [Owenia fusiformis] diamond 2646 150 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Sabellida Oweniidae Owenia Owenia fusiformis
15581066 15581066 PRJNA1123309_P_NODE_28653_length_303_cov_1.360870_g28273_i0 PRJNA1123309 28653 303 1.36087 4.1234361 Paralvinella palmiformis 53620 Annelida Annelida 82.8 7.28e-18   NR KAK2143623.1 53620 g28273 i0 58.8 0.673267326732673 68 23 67.3 1 210 7 4 66 KAK2143623.1 hypothetical protein LSH36_825g03002 [Paralvinella palmiformis] diamond 204 82.8 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Terebellida Alvinellidae Paralvinella Paralvinella palmiformis
26710886 26710886 PRJNA1123309_P_NODE_58941_length_246_cov_0.901734_g58561_i0 PRJNA1123309 58941 246 0.901734 2.21826564 Sabellida 6362 Annelida Annelida 63.9 1.29e-9   NR KAK2176742.1 27915 g58561 i0 42.9 3.67073170731707 77 44 93.9 0 233 3 389 465 KAK2176742.1 hypothetical protein NP493_643g03051 [Ridgeia piscesae] diamond 903 63.9 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Sabellida Siboglinidae Ridgeia Ridgeia piscesae
28838583 28838583 PRJNA1123309_P_NODE_22168_length_339_cov_0.966165_g21789_i0 PRJNA1123309 22168 339 0.966165 3.27529935 Paralvinella palmiformis 53620 Annelida Annelida 46.2 0.0069   NR KAK2151515.1 53620 g21789 i0 59.5 0.327433628318584 37 15 32.7 0 26 136 44 80 KAK2151515.1 hypothetical protein LSH36_361g07004 [Paralvinella palmiformis] diamond 111 46.2 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Terebellida Alvinellidae Paralvinella Paralvinella palmiformis
30860087 30860087 PRJNA1123309_P_NODE_61514_length_245_cov_0.906977_g61134_i0 PRJNA1123309 61514 245 0.906977 2.22209365 Pectinaria gouldii 260746 Annelida Annelida 85.9 2.04e-19   NR ACJ09354.1 260746 g61134 i0 71.6 1.64081632653061 67 18 82 1 45 245 1 66 ACJ09354.1 hypothetical protein [Pectinaria gouldii] diamond 402 85.9 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Terebellida Pectinariidae Pectinaria Pectinaria gouldii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;