RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA1123309" and tax_kingdom = "Thermotogati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 5 ✖

bioproject 1

  • PRJNA1123309 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27470337 27470337 PRJNA1123309_P_NODE_49583_length_252_cov_0.871508_g49203_i0 PRJNA1123309 49583 252 0.871508 2.19620016 Bacteria 2 Bacteria Bacteria 125 1.2099999999999999e-32   NR WP_183984741.1 521158 g49203 i0 71.1 8.89285714285714 83 24 98.8 0 251 3 128 210 WP_183984741.1 glycosyltransferase [Deinobacterium chartae] diamond 2241 126 0.992063492063492 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinobacterium Deinobacterium chartae
29901538 29901538 PRJNA1123309_P_NODE_41611_length_266_cov_2.248705_g41231_i0 PRJNA1123309 41611 266 2.248705 5.9815553 root 1 Root_unresolved Root_unresolved 94.7 4.23e-22   NR MDO4264703.1 47478 g41231 i0 58.8 1.81578947368421 80 30 86.8 2 34 264 2 81 MDO4264703.1 NAD(P)H-dependent oxidoreductase [Deinococcus sp.] diamond 483 95.5 0.991623036649215 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.
31524052 31524052 PRJNA1123309_P_NODE_63296_length_244_cov_0.912281_g62916_i0 PRJNA1123309 63296 244 0.912281 2.22596564 Deinococcus piscis 394230 Bacteria Bacteria 156 1.33e-45   NR GHG08658.1 394230 g62916 i0 96.1 0.94672131147541 77 3 94.7 0 9 239 104 180 GHG08658.1 hypothetical protein GCM10017783_21530 [Deinococcus piscis] diamond 231 156 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus piscis
32030151 32030151 PRJNA1123309_P_NODE_30458_length_295_cov_1.166667_g30078_i0 PRJNA1123309 30458 295 1.166667 3.44166765 Deinococcus sp. 47478 Bacteria Bacteria 153 3.0699999999999992e-43   NR WP_291427152.1 47478 g30078 i0 81.9 3.80338983050847 94 17 95.6 0 294 13 191 284 WP_291427152.1 transposase, partial [Deinococcus sp.] diamond 1122 153 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.
32145833 32145833 PRJNA1123309_P_NODE_16298_length_385_cov_1.105769_g15919_i0 PRJNA1123309 16298 385 1.105769 4.25721065 Bacteria 2 Bacteria Bacteria 70.9 8.35e-13   NR TYB95644.1 1955248 g15919 i0 45.7 1.70649350649351 70 37 54.5 1 22 231 54 122 TYB95644.1 MAG: glycine cleavage system protein GcvH [Kosmotoga sp.] diamond 657 71.6 0.990223463687151 Bacteria   Thermotogati Thermotogota Thermotogae Kosmotogales Kosmotogaceae Kosmotoga Kosmotoga sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;