RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1122875" and tax_phylum = "Rhodothermota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1122875 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6655653 6655653 PRJNA1122875_P_NODE_45986_length_248_cov_1.702857_g45762_i0 PRJNA1122875 45986 248 1.702857 4.22308536 Bacteria 2 Bacteria Bacteria 115 8.36e-28   NR HYE56995.1 2306054 g45762 i0 72 4.95967741935484 82 22 99.2 1 247 2 500 580 HYE56995.1 glutamine--fructose-6-phosphate transaminase (isomerizing) [Rhodothermales bacterium] diamond 1230 115 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium
29059705 29059705 PRJNA1122875_P_NODE_11768_length_485_cov_1.618932_g11546_i0 PRJNA1122875 11768 485 1.618932 7.8518202 Rhodothermus bifroesti 2823335 Bacteria Bacteria 147 1.6799999999999999e-40   NR WP_210376410.1 2823335 g11546 i0 44.2 1.02061855670103 165 87 99 2 484 5 66 230 WP_210376410.1 GH12 family glycosyl hydrolase domain-containing protein [Rhodothermus bifroesti] diamond 495 147 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodothermus Rhodothermus bifroesti

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;