RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "diamond", bioproject = "PRJNA1122875" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1122875 · 8 ✖

analysis 1

  • diamond · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1552153 1552153 PRJNA1122875_P_NODE_25762_length_326_cov_1.988142_g25538_i0 PRJNA1122875 25762 326 1.988142 6.48134292 Simkania sp. 34094 Bacteria Bacteria 75.1 1.08e-13   NR MCB1084310.1 34094 g25538 i0 64.2 0.487730061349693 53 19 48.8 0 325 167 120 172 MCB1084310.1 hypothetical protein [Simkania sp.] diamond 159 75.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Simkania Simkania sp.
27006755 27006755 PRJNA1122875_P_NODE_43822_length_250_cov_3.338983_g43598_i0 PRJNA1122875 43822 250 3.338983 8.3474575 Chlamydiales bacterium 2047757 Bacteria Bacteria 110 7.7e-29   NR MCP5470421.1 2047757 g43598 i0 70.4 0.972 81 24 97.2 0 6 248 49 129 MCP5470421.1 hypothetical protein [Chlamydiales bacterium] diamond 243 110 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
27533314 27533314 PRJNA1122875_P_NODE_51903_length_243_cov_0.905882_g51679_i0 PRJNA1122875 51903 243 0.905882 2.20129326 Bacteria 2 Bacteria Bacteria 66.6 1.33e-10   NR SCA62480.1 1871324 g51679 i0 54.7 1.28395061728395 53 24 65.4 0 2 160 350 402 SCA62480.1 Dihydroorotase [Chlamydiales bacterium SCGC AG-110-M15] diamond 312 66.6 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium SCGC AG-110-M15
29375339 29375339 PRJNA1122875_P_NODE_18909_length_384_cov_0.974277_g18685_i0 PRJNA1122875 18909 384 0.974277 3.74122368 Simkania sp. 34094 Bacteria Bacteria 191 1.89e-58   NR MCB1084310.1 34094 g18685 i0 79.2 0.9375 120 25 93.8 0 360 1 1 120 MCB1084310.1 hypothetical protein [Simkania sp.] diamond 360 191 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Simkania Simkania sp.
29722365 29722365 PRJNA1122875_P_NODE_19130_length_381_cov_2.006494_g18906_i0 PRJNA1122875 19130 381 2.006494 7.64474214 Waddliaceae bacterium 2026802 Bacteria Bacteria 163 2.2e-46   NR HEY4831209.1 2026802 g18906 i0 69.8 0.992125984251969 126 38 99.2 0 380 3 212 337 HEY4831209.1 F0F1 ATP synthase subunit alpha [Waddliaceae bacterium] diamond 378 163 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Waddliaceae   Waddliaceae bacterium
29754094 29754094 PRJNA1122875_P_NODE_14531_length_438_cov_1.002740_g14307_i0 PRJNA1122875 14531 438 1.00274 4.3920012 Chlamydiota bacterium 2081524 Bacteria Bacteria 54.3 2.58e-6   NR MCX6991377.1 2081524 g14307 i0 31.8 1.17808219178082 85 58 58.2 0 257 3 13 97 MCX6991377.1 ASCH domain-containing protein [Chlamydiota bacterium] diamond 516 54.3 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
30196365 30196365 PRJNA1122875_P_NODE_42352_length_253_cov_1.672222_g42128_i0 PRJNA1122875 42352 253 1.672222 4.23072166 Chlamydiales bacterium 2047757 Bacteria Bacteria 63.5 1.53e-9   NR MCP5506404.1 2047757 g42128 i0 60.9 0.545454545454545 46 18 54.5 0 2 139 212 257 MCP5506404.1 hypothetical protein [Chlamydiales bacterium] diamond 138 63.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
31998367 31998367 PRJNA1122875_P_NODE_16118_length_416_cov_1.483965_g15894_i0 PRJNA1122875 16118 416 1.483965 6.1732944 Chlamydiales bacterium 2047757 Bacteria Bacteria 150 1.6299999999999999e-43   NR MCP5470421.1 2047757 g15894 i0 62.3 2.46634615384615 114 43 82.2 0 34 375 1 114 MCP5470421.1 hypothetical protein [Chlamydiales bacterium] diamond 1026 150 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;