RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1122875" and tax_phylum = "Candidatus Altimarinota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1122875 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3579367 3579367 PRJNA1122875_P_NODE_3763_length_782_cov_1.346968_g3571_i0 PRJNA1122875 3763 782 1.346968 10.53328976 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 314 2.52e-102   NR MDF2378969.1 2044595 g3571 i0 67.6 0.828644501278772 216 70 82.9 0 4 651 204 419 MDF2378969.1 adenylosuccinate synthase [Candidatus Altimarinota bacterium] diamond 648 314 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
30164731 30164731 PRJNA1122875_P_NODE_50152_length_244_cov_1.654971_g49928_i0 PRJNA1122875 50152 244 1.654971 4.03812924 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 43.9 0.0144   NR MBC7503589.1 2044595 g49928 i0 36.5 4.53688524590164 74 39 82.4 3 243 43 59 131 MBC7503589.1 NADP-dependent malic enzyme [Candidatus Altimarinota bacterium] diamond 1107 43.9 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;