RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1120771" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1120771 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6131412 6131412 PRJNA1120771_S_NODE_17205_length_276_cov_27.806867_g16805_i0 PRJNA1120771 17205 276 27.806867 76.74695292 Trematoda 6178 Platyhelminthes Platyhelminthes 139 2.45e-40   NR CAX72137.1 6182 g16805 i0 75 28.3478260869565 92 22 100 1 276 1 39 129 CAX72137.1 ribosomal protein S15 [Schistosoma japonicum] diamond 7824 140 0.992857142857143 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
19402590 19402590 PRJNA1120771_S_NODE_7376_length_374_cov_1.577039_g6976_i0 PRJNA1120771 7376 374 1.577039 5.89812586 Metazoa 33208 Platyhelminthes Platyhelminthes 143 6.3599999999999996e-40   NR VDN13523.1 60516 g6976 i0 69.6 8.85561497326203 92 28 73.8 0 373 98 142 233 VDN13523.1 unnamed protein product [Dibothriocephalus latus] diamond 3312 143 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Dibothriocephalus Dibothriocephalus latus
28965050 28965050 PRJNA1120771_S_NODE_31788_length_216_cov_6.872832_g31388_i0 PRJNA1120771 31788 216 6.872832 14.84531712 Dibothriocephalus latus 60516 Platyhelminthes Platyhelminthes 48.9 1.35e-4   NR VDN13523.1 60516 g31388 i0 100 0.277777777777778 20 0 27.8 0 214 155 214 233 VDN13523.1 unnamed protein product [Dibothriocephalus latus] diamond 60 48.9 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Dibothriocephalus Dibothriocephalus latus
29364713 29364713 PRJNA1120771_S_NODE_14549_length_294_cov_2.079681_g14149_i0 PRJNA1120771 14549 294 2.079681 6.11426214 Metazoa 33208 Platyhelminthes Platyhelminthes 45.4 0.00374   NR VDQ12318.1 157069 g14149 i0 37.8 3.56122448979592 82 34 82.7 3 256 14 82 147 VDQ12318.1 unnamed protein product [Trichobilharzia regenti] diamond 1047 45.4 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Trichobilharzia Trichobilharzia regenti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;