RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1120771" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1120771 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10480257 10480257 PRJNA1120771_S_NODE_27829_length_229_cov_0.924731_g27429_i0 PRJNA1120771 27829 229 0.924731 2.11763399 Eimeria 5800 SAR_Eukaryotes SAR_Eukaryotes 123 9.64e-31   NR XP_013253241.1 5801 g27429 i0 74.7 7.86026200873362 75 19 98.3 0 3 227 588 662 XP_013253241.1 DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, partial [Eimeria acervulina] diamond 1800 124 0.991935483870968 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria acervulina
15056246 15056246 PRJNA1120771_S_NODE_33152_length_213_cov_1.017647_g32752_i0 PRJNA1120771 33152 213 1.017647 2.16758811 Hepatocystis sp. ex Piliocolobus tephrosceles 2600580 SAR_Eukaryotes SAR_Eukaryotes 96.3 5.98e-24   NR VWU51230.1 2600580 g32752 i0 71.4 2.95774647887324 70 20 98.6 0 212 3 19 88 VWU51230.1 60S ribosomal protein L44 [Hepatocystis sp. ex Piliocolobus tephrosceles] diamond 630 96.3 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Hepatocystis Hepatocystis sp. ex Piliocolobus tephrosceles
28301786 28301786 PRJNA1120771_S_NODE_14226_length_296_cov_2.715415_g13826_i0 PRJNA1120771 14226 296 2.715415 8.0376284 Eimeria brunetti 51314 SAR_Eukaryotes SAR_Eukaryotes 69.7 3.15e-12   NR CDJ52675.1 51314 g13826 i0 49.3 3.33445945945946 75 38 76 0 41 265 69 143 CDJ52675.1 elongation factor 1, putative [Eimeria brunetti] diamond 987 69.7 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria brunetti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;