RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1120586" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1120586 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15578891 15578891 PRJNA1120586_P_NODE_33313_length_251_cov_1.560440_g33122_i0 PRJNA1120586 33313 251 1.56044 3.9167044 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 67.8 9.42e-13   NR RYD71399.1 2026800 g33122 i0 53.4 0.872509960159363 73 34 87.3 0 219 1 6 78 RYD71399.1 MAG: hypothetical protein EOP84_24950, partial [Verrucomicrobiaceae bacterium] diamond 219 67.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
26785450 26785450 PRJNA1120586_P_NODE_44461_length_232_cov_0.883436_g44270_i0 PRJNA1120586 44461 232 0.883436 2.04957152 Opitutaceae bacterium 2006848 Bacteria Bacteria 78.6 3.22e-16   NR MFA5056513.1 2006848 g44270 i0 50 1.00862068965517 78 38 99.6 1 1 231 15 92 MFA5056513.1 hypothetical protein [Opitutaceae bacterium] diamond 234 78.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
29690714 29690714 PRJNA1120586_P_NODE_41870_length_234_cov_0.872727_g41679_i0 PRJNA1120586 41870 234 0.872727 2.04218118 Opitutaceae bacterium 2006848 Bacteria Bacteria 65.1 4.53e-10   NR MCE2861284.1 2006848 g41679 i0 93.9 1.26923076923077 33 2 42.3 0 1 99 731 763 MCE2861284.1 oligopeptide transporter, OPT family [Opitutaceae bacterium] diamond 297 65.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
31460795 31460795 PRJNA1120586_P_NODE_44076_length_232_cov_0.883436_g43885_i0 PRJNA1120586 44076 232 0.883436 2.04957152 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 155 6.889999999999998e-42   NR MEY4688418.1 2026799 g43885 i0 97.4 1.99137931034483 77 2 99.6 0 231 1 580 656 MEY4688418.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 462 155 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;