RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1120586" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1120586 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28206906 28206906 PRJNA1120586_P_NODE_48566_length_229_cov_0.900000_g48375_i0 PRJNA1120586 48566 229 0.9 2.061 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 134 2.28e-37   NR XP_002675858.1 5762 g48375 i0 86.7 0.982532751091703 75 10 98.3 0 3 227 77 151 XP_002675858.1 uncharacterized protein NAEGRDRAFT_68859 [Naegleria gruberi] diamond 225 134 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
29722336 29722336 PRJNA1120586_P_NODE_41570_length_234_cov_0.872727_g41379_i0 PRJNA1120586 41570 234 0.872727 2.04218118 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 124 2.1e-31   NR XP_002675252.1 5762 g41379 i0 71.4 0.987179487179487 77 22 98.7 0 2 232 388 464 XP_002675252.1 uncharacterized protein NAEGRDRAFT_80371 [Naegleria gruberi] diamond 231 124 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;