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contig_metadata

31 rows where analysis = "diamond", bioproject = "PRJNA1120586" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 31 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1120586 · 31 ✖

analysis 1

  • diamond · 31 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2827053 2827053 PRJNA1120586_P_NODE_51303_length_227_cov_0.911392_g51112_i0 PRJNA1120586 51303 227 0.911392 2.06885984 Leifsonia 110932 Bacteria Bacteria 134 2.62e-36   NR WP_241704703.1 150026 g51112 i0 94.7 2.97356828193833 75 4 99.1 0 2 226 146 220 WP_241704703.1 TadA family conjugal transfer-associated ATPase [Leifsonia shinshuensis] diamond 675 135 0.992592592592593 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leifsonia Leifsonia shinshuensis
9204277 9204277 PRJNA1120586_P_NODE_47088_length_230_cov_0.894410_g46897_i0 PRJNA1120586 47088 230 0.89441 2.057143 Marmoricola sp. 1909296 Bacteria Bacteria 122 5.5299999999999996e-31   NR HET6561670.1 1909296 g46897 i0 80 1.9695652173913 75 15 97.8 0 5 229 268 342 HET6561670.1 site-2 protease family protein [Marmoricola sp.] diamond 453 122 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Marmoricola Marmoricola sp.
9956500 9956500 PRJNA1120586_P_NODE_49248_length_228_cov_0.905660_g49057_i0 PRJNA1120586 49248 228 0.90566 2.0649048 Microbacterium lacticum 33885 Bacteria Bacteria 106 1.3299999999999999e-24   NR TQM95143.1 33885 g49057 i0 100 0.697368421052632 53 0 69.7 0 161 3 162 214 TQM95143.1 SNF2 family DNA or RNA helicase [Microbacterium lacticum] diamond 159 106 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium lacticum
10479985 10479985 PRJNA1120586_P_NODE_50369_length_227_cov_1.822785_g50178_i0 PRJNA1120586 50369 227 1.822785 4.13772195 Gaiella sp. 2663207 Bacteria Bacteria 120 5.279999999999999e-32   NR HEY6076178.1 2663207 g50178 i0 73 0.977973568281938 74 20 97.8 0 6 227 1 74 HEY6076178.1 metallophosphoesterase family protein [Gaiella sp.] diamond 222 120 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Gaiellales Gaiellaceae Gaiella Gaiella sp.
15056074 15056074 PRJNA1120586_P_NODE_30792_length_258_cov_1.529101_g30601_i0 PRJNA1120586 30792 258 1.529101 3.94508058 Actinomycetospora chiangmaiensis 402650 Bacteria Bacteria 139 6.159999999999999e-37   NR WP_018331025.1 402650 g30601 i0 87.2 3 86 11 100 0 1 258 373 458 WP_018331025.1 allantoicase [Actinomycetospora chiangmaiensis] diamond 774 139 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinomycetospora Actinomycetospora chiangmaiensis
18128124 18128124 PRJNA1120586_P_NODE_51555_length_227_cov_0.911392_g51364_i0 PRJNA1120586 51555 227 0.911392 2.06885984 Bacillati 1783272 Bacteria Bacteria 150 2.66e-44   NR MES6505837.1 1747 g51364 i0 100 3.9647577092511 75 0 99.1 0 227 3 90 164 MES6505837.1 IS5 family transposase [Cutibacterium acnes] diamond 900 150 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
20154673 20154673 PRJNA1120586_P_NODE_1236_length_896_cov_23.779927_g1092_i0 PRJNA1120586 1236 896 23.779927 213.06814592 Collinsella intestinalis 147207 Bacteria Bacteria 342 2.61e-116   NR WP_302756403.1 147207 g1092 i0 99.4 0.565848214285714 169 1 56.6 0 822 316 1 169 WP_302756403.1 pyridoxamine 5'-phosphate oxidase family protein [Collinsella intestinalis] diamond 507 342 1 Bacteria   Bacillati Actinomycetota Coriobacteriia Coriobacteriales Coriobacteriaceae Collinsella Collinsella intestinalis
20677819 20677819 PRJNA1120586_P_NODE_51017_length_227_cov_0.911392_g50826_i0 PRJNA1120586 51017 227 0.911392 2.06885984 Microbacterium 33882 Bacteria Bacteria 137 1.49e-39   NR WP_071644615.1 33882 g50826 i0 100 0.991189427312775 75 0 99.1 0 227 3 28 102 WP_071644615.1 MULTISPECIES: DUF6328 family protein [Microbacterium] diamond 225 137 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium  
26616100 26616100 PRJNA1120586_P_NODE_30441_length_259_cov_1.800000_g30250_i0 PRJNA1120586 30441 259 1.8 4.662 root 1 Root_unresolved Root_unresolved 48.9 1.16e-4   NR MES9247268.1 1747 g30250 i0 52.8 4.2972972972973 53 19 56.8 2 97 243 61 111 MES9247268.1 hypothetical protein [Cutibacterium acnes] diamond 1113 48.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
26626888 26626888 PRJNA1120586_P_NODE_51461_length_227_cov_0.911392_g51270_i0 PRJNA1120586 51461 227 0.911392 2.06885984 Pseudoclavibacter sp. 1915061 Bacteria Bacteria 73.2 2.45e-15   NR HHW51032.1 1915061 g51270 i0 97.1 0.449339207048458 34 1 44.9 0 226 125 16 49 HHW51032.1 hypothetical protein [Pseudoclavibacter sp.] diamond 102 73.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Pseudoclavibacter Pseudoclavibacter sp.
26817096 26817096 PRJNA1120586_P_NODE_52001_length_226_cov_1.375796_g51810_i0 PRJNA1120586 52001 226 1.375796 3.10929896 Kribbella turkmenica 2530375 Bacteria Bacteria 39.7 0.0495   NR WP_233712618.1 2530375 g51810 i0 42.4 0.438053097345133 33 19 43.8 0 37 135 24 56 WP_233712618.1 hypothetical protein [Kribbella turkmenica] diamond 99 39.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Kribbellaceae Kribbella Kribbella turkmenica
26869765 26869765 PRJNA1120586_P_NODE_43561_length_232_cov_1.325153_g43370_i0 PRJNA1120586 43561 232 1.325153 3.07435496 Nocardiaceae 85025 Bacteria Bacteria 154 1.6399999999999996e-43   NR WP_201790529.1 43767 g43370 i0 87 3.98275862068966 77 10 99.6 0 2 232 208 284 WP_201790529.1 tyrosine-type recombinase/integrase [Prescottella equi] diamond 924 155 0.993548387096774 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Prescottella Prescottella equi
27132903 27132903 PRJNA1120586_P_NODE_36382_length_243_cov_1.534483_g36191_i0 PRJNA1120586 36382 243 1.534483 3.72879369 Nocardioides terrisoli 3388267 Bacteria Bacteria 43.1 0.0261   NR WP_310964507.1 3388267 g36191 i0 45.2 0.765432098765432 62 33 75.3 1 8 190 296 357 WP_310964507.1 DUF6350 family protein [Nocardioides terrisoli] diamond 186 43.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides terrisoli
27786117 27786117 PRJNA1120586_P_NODE_47844_length_229_cov_0.900000_g47653_i0 PRJNA1120586 47844 229 0.9 2.061 Rhodococcus 1827 Bacteria Bacteria 151 1.1999999999999999e-43   NR GAA3143909.1 172041 g47653 i0 100 2.94759825327511 75 0 98.3 0 3 227 176 250 GAA3143909.1 hypothetical protein GCM10020255_021420 [Rhodococcus baikonurensis] diamond 675 151 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus baikonurensis
28933358 28933358 PRJNA1120586_P_NODE_48588_length_229_cov_0.900000_g48397_i0 PRJNA1120586 48588 229 0.9 2.061 Isoptericola halotolerans 300560 Bacteria Bacteria 83.2 8.99e-19   NR WP_171783312.1 300560 g48397 i0 61.7 3.81222707423581 60 23 78.6 0 182 3 2 61 WP_171783312.1 DUF1905 domain-containing protein [Isoptericola halotolerans] diamond 873 83.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Promicromonosporaceae Isoptericola Isoptericola halotolerans
29059691 29059691 PRJNA1120586_P_NODE_52928_length_226_cov_0.917197_g52737_i0 PRJNA1120586 52928 226 0.917197 2.07286522 Nocardia brasiliensis 37326 Bacteria Bacteria 42.4 0.0425   NR WP_280406126.1 37326 g52737 i0 33.3 0.79646017699115 60 40 79.6 0 47 226 454 513 WP_280406126.1 BREX-2 system adenine-specific DNA-methyltransferase PglX [Nocardia brasiliensis] diamond 180 42.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia brasiliensis
29154575 29154575 PRJNA1120586_P_NODE_42349_length_233_cov_0.878049_g42158_i0 PRJNA1120586 42349 233 0.878049 2.04585417 Blastococcus aurantiacus 1550231 Bacteria Bacteria 139 7.9e-39   NR WP_091770742.1 1550231 g42158 i0 90.9 0.991416309012876 77 7 99.1 0 3 233 42 118 WP_091770742.1 AraC family transcriptional regulator [Blastococcus aurantiacus] diamond 231 139 1 Bacteria   Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Blastococcus Blastococcus aurantiacus
29343854 29343854 PRJNA1120586_P_NODE_49769_length_228_cov_0.905660_g49578_i0 PRJNA1120586 49769 228 0.90566 2.0649048 Actinotalea sp. 1872145 Bacteria Bacteria 42.4 0.0404   NR MBC7290327.1 1872145 g49578 i0 33.8 1.05263157894737 80 46 97.4 2 1 222 167 245 MBC7290327.1 DUF3097 domain-containing protein [Actinotalea sp.] diamond 240 42.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Actinotalea Actinotalea sp.
29533227 29533227 PRJNA1120586_P_NODE_41070_length_234_cov_0.872727_g40879_i0 PRJNA1120586 41070 234 0.872727 2.04218118 Rhodococcus erythropolis 1833 Bacteria Bacteria 137 8.61e-40   NR WP_197941992.1 1833 g40879 i0 90.9 0.987179487179487 77 7 98.7 0 2 232 10 86 WP_197941992.1 hypothetical protein [Rhodococcus erythropolis] diamond 231 137 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus erythropolis
29785708 29785708 PRJNA1120586_P_NODE_40751_length_234_cov_1.745455_g40560_i0 PRJNA1120586 40751 234 1.745455 4.0843647 Microbacterium abyssi 2782166 Bacteria Bacteria 145 1.35e-39   NR WP_194420384.1 2782166 g40560 i0 89.7 1 78 8 100 0 234 1 66 143 WP_194420384.1 phenylacetate--CoA ligase family protein [Microbacterium abyssi] diamond 234 145 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium abyssi
30101546 30101546 PRJNA1120586_P_NODE_51532_length_227_cov_0.911392_g51341_i0 PRJNA1120586 51532 227 0.911392 2.06885984 Dietzia timorensis 499555 Bacteria Bacteria 117 2.9499999999999993e-31   NR WP_303912485.1 499555 g51341 i0 93.3 0.79295154185022 60 4 79.3 0 182 3 1 60 WP_303912485.1 dUTP diphosphatase [Dietzia timorensis] diamond 180 117 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Dietziaceae Dietzia Dietzia timorensis
30249175 30249175 PRJNA1120586_P_NODE_41532_length_234_cov_0.872727_g41341_i0 PRJNA1120586 41532 234 0.872727 2.04218118 Microbacterium 33882 Bacteria Bacteria 163 1.44e-46   NR ODT25306.1 1660115 g41341 i0 100 2 78 0 100 0 234 1 32 109 ODT25306.1 MAG: hypothetical protein ABS64_02970 [Microbacterium sp. SCN 69-37] diamond 468 163 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. SCN 69-37
30564544 30564544 PRJNA1120586_P_NODE_32373_length_254_cov_1.167568_g32182_i0 PRJNA1120586 32373 254 1.167568 2.96562272 Streptomyces 1883 Bacteria Bacteria 42.7 0.0398   NR WP_329823685.1 2593676 g32182 i0 42.6 1.11023622047244 47 27 55.5 0 231 91 231 277 WP_329823685.1 MULTISPECIES: ScbA/BarX family gamma-butyrolactone biosynthesis protein [unclassified Streptomyces] diamond 282 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces  
31302395 31302395 PRJNA1120586_P_NODE_42515_length_233_cov_0.878049_g42324_i0 PRJNA1120586 42515 233 0.878049 2.04585417 Lawsonella sp. 2041415 Bacteria Bacteria 67.8 4.85e-11   NR WP_320616745.1 2041415 g42324 i0 100 0.836909871244635 33 0 42.5 0 135 233 214 246 WP_320616745.1 transcription termination factor Rho [Lawsonella sp.] diamond 195 67.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella Lawsonella sp.
31365868 31365868 PRJNA1120586_P_NODE_24016_length_281_cov_1.424528_g23825_i0 PRJNA1120586 24016 281 1.424528 4.00292368 Nonomuraea cavernae 2045107 Bacteria Bacteria 45.1 0.00503   NR WP_189127010.1 2045107 g23825 i0 35.1 0.822064056939502 77 38 82.2 3 26 256 59 123 WP_189127010.1 hypothetical protein [Nonomuraea cavernae] diamond 231 45.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Nonomuraea Nonomuraea cavernae
31513280 31513280 PRJNA1120586_P_NODE_40016_length_235_cov_0.867470_g39825_i0 PRJNA1120586 40016 235 0.86747 2.0385545 Actinomycetes 1760 Bacteria Bacteria 128 3.61e-33   NR WP_310312880.1 33920 g39825 i0 75.6 2.98723404255319 78 19 99.6 0 1 234 75 152 WP_310312880.1 restriction endonuclease subunit S [Saccharothrix longispora] diamond 702 129 0.992248062015504 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharothrix Saccharothrix longispora
31555697 31555697 PRJNA1120586_P_NODE_46496_length_230_cov_0.894410_g46305_i0 PRJNA1120586 46496 230 0.89441 2.057143 Mycobacterium sp. Root135 1736457 Bacteria Bacteria 147 5.509999999999999e-42   NR WP_056554765.1 1736457 g46305 i0 92.1 1.98260869565217 76 6 99.1 0 229 2 6 81 WP_056554765.1 metallophosphoesterase [Mycobacterium sp. Root135] diamond 456 147 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. Root135
32061546 32061546 PRJNA1120586_P_NODE_45578_length_231_cov_0.888889_g45387_i0 PRJNA1120586 45578 231 0.888889 2.05333359 Kitasatospora sp. NPDC 1871188 Bacteria Bacteria 43.1 0.00609   NR WP_360193962.1 3155620 g45387 i0 41 1.41558441558442 39 23 50.6 0 41 157 5 43 WP_360193962.1 immunity 53 family protein [Kitasatospora sp. NPDC047058] diamond 327 43.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Kitasatospora Kitasatospora sp. NPDC047058
32082424 32082424 PRJNA1120586_P_NODE_25078_length_277_cov_1.221154_g24887_i0 PRJNA1120586 25078 277 1.221154 3.38259658 Bacteria 2 Bacteria Bacteria 52.8 6.97e-7   NR WP_358153629.1 65515 g24887 i0 65.7 5.1985559566787 35 12 37.9 0 215 111 28 62 WP_358153629.1 VOC family protein [Nonomuraea dietziae] diamond 1440 52.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Nonomuraea Nonomuraea dietziae
32315063 32315063 PRJNA1120586_P_NODE_29319_length_263_cov_1.030928_g29128_i0 PRJNA1120586 29319 263 1.030928 2.71134064 Leifsonia sp. LS1 2828483 Bacteria Bacteria 135 4.159999999999999e-37   NR WP_226656216.1 2828483 g29128 i0 80.5 0.992395437262357 87 17 99.2 0 3 263 87 173 WP_226656216.1 type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein [Leifsonia sp. LS1] diamond 261 135 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leifsonia Leifsonia sp. LS1
32315066 32315066 PRJNA1120586_P_NODE_44079_length_232_cov_0.883436_g43888_i0 PRJNA1120586 44079 232 0.883436 2.04957152 Lawsonella clevelandensis 1528099 Bacteria Bacteria 155 3.32e-47   NR WP_303678662.1 1528099 g43888 i0 98.7 0.995689655172414 77 1 99.6 0 232 2 30 106 WP_303678662.1 Rv2175c family DNA-binding protein [Lawsonella clevelandensis] diamond 231 155 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella Lawsonella clevelandensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;