RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1120586" and tax_clade = "Sar"

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tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA1120586 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27480873 27480873 PRJNA1120586_P_NODE_5463_length_483_cov_10.002415_g5273_i0 PRJNA1120586 5463 483 10.002415 48.31166445 Ochromonas danica 2986 SAR_Eukaryotes SAR_Eukaryotes 115 2.8199999999999997e-30   NR NP_066431.1 2986 g5273 i0 82.4 1.36645962732919 74 13 46 0 270 49 1 74 NP_066431.1 ATP synthase F0 subunit 9 [Ochromonas danica] diamond 660 115 1 Eukaryota Sar     Chrysophyceae Chromulinales Chromulinaceae Ochromonas Ochromonas danica
32693702 32693702 PRJNA1120586_P_NODE_52520_length_226_cov_0.917197_g52329_i0 PRJNA1120586 52520 226 0.917197 2.07286522 Ochromonadaceae sp. CCMP2298 483371 SAR_Eukaryotes SAR_Eukaryotes 92.4 1.15e-22   NR KAJ1406109.1 483371 g52329 i0 66.2 0.86283185840708 65 21 85 1 204 13 1 65 KAJ1406109.1 hypothetical protein B484DRAFT_404254, partial [Ochromonadaceae sp. CCMP2298] diamond 195 92.4 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae   Ochromonadaceae sp. CCMP2298

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;