RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA1120203" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1120203 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28112265 28112265 PRJNA1120203_P_NODE_97745_length_244_cov_0.900585_g96729_i0 PRJNA1120203 97745 244 0.900585 2.1974274 Spirochaetia bacterium 2053615 Bacteria Bacteria 108 1.46e-25   NR MFP4385519.1 2053615 g96729 i0 60 0.983606557377049 80 32 98.4 0 240 1 188 267 MFP4385519.1 extracellular solute-binding protein [Spirochaetia bacterium] diamond 240 108 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia       Spirochaetia bacterium
28206901 28206901 PRJNA1120203_P_NODE_95466_length_245_cov_0.895349_g94450_i0 PRJNA1120203 95466 245 0.895349 2.19360505 Spirochaetota bacterium 2202144 Bacteria Bacteria 119 1.42e-30   NR HOS40595.1 2202144 g94450 i0 65.4 0.991836734693878 81 28 99.2 0 1 243 217 297 HOS40595.1 SGNH/GDSL hydrolase family protein [Spirochaetota bacterium] diamond 243 119 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
29490796 29490796 PRJNA1120203_P_NODE_78750_length_251_cov_0.865169_g77734_i0 PRJNA1120203 78750 251 0.865169 2.17157419 Bacteria 2 Bacteria Bacteria 73.2 1.69e-14   NR HNJ05950.1 2026757 g77734 i0 100 1.29083665338645 36 0 43 0 249 142 78 113 HNJ05950.1 polysaccharide deacetylase family protein [Leptospiraceae bacterium] diamond 324 73.2 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae   Leptospiraceae bacterium
29722331 29722331 PRJNA1120203_P_NODE_97550_length_244_cov_0.900585_g96534_i0 PRJNA1120203 97550 244 0.900585 2.1974274 Spirochaetia bacterium 2053615 Bacteria Bacteria 87.4 2.57e-19   NR MDA3939969.1 2053615 g96534 i0 51.9 0.995901639344262 81 39 99.6 0 1 243 65 145 MDA3939969.1 NUDIX hydrolase [Spirochaetia bacterium] diamond 243 87.4 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia       Spirochaetia bacterium
30670330 30670330 PRJNA1120203_P_NODE_79873_length_251_cov_0.865169_g78857_i0 PRJNA1120203 79873 251 0.865169 2.17157419 uncultured Brachyspira sp. 221953 Bacteria Bacteria 149 8.99e-41   NR WP_288695409.1 221953 g78857 i0 97.6 0.99203187250996006 83 2 99.2 0 2 250 302 384 WP_288695409.1 lipopolysaccharide biosynthesis protein [uncultured Brachyspira sp.] diamond 249 149 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Brachyspirales Brachyspiraceae Brachyspira uncultured Brachyspira sp.
32693680 32693680 PRJNA1120203_P_NODE_58820_length_293_cov_2.350000_g57804_i0 PRJNA1120203 58820 293 2.35 6.8855 Treponema sp. OMZ 855 1643512 Bacteria Bacteria 45.1 0.00324   NR WP_253673698.1 1643512 g57804 i0 72 0.255972696245734 25 7 25.6 0 153 227 100 124 WP_253673698.1 Bbp16 family capsid cement protein [Treponema sp. OMZ 855] diamond 75 45.1 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp. OMZ 855

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;