RNAquarium Metadata Server
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contig_metadata

11 rows where analysis = "diamond", bioproject = "PRJNA1120203" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 11 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1120203 · 11 ✖

analysis 1

  • diamond · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13028297 13028297 PRJNA1120203_P_NODE_105651_length_241_cov_0.916667_g104635_i0 PRJNA1120203 105651 241 0.916667 2.20916747 Ostreococcus tauri 70448 Plants Plants 114 2.1e-27   NR OUS42255.1 70448 g104635 i0 65.8 0.983402489626556 79 26 97.1 1 237 4 309 387 OUS42255.1 SdiA-regulated-domain-containing protein [Ostreococcus tauri] diamond 237 114 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Bathycoccaceae Ostreococcus Ostreococcus tauri
20676958 20676958 PRJNA1120203_P_NODE_90257_length_247_cov_0.885057_g89241_i0 PRJNA1120203 90257 247 0.885057 2.18609079 Micromonas commoda 296587 Plants Plants 113 4.8500000000000006e-27   NR XP_002502931.1 296587 g89241 i0 70.7 0.995951417004049 82 10 99.6 1 1 246 811 878 XP_002502931.1 lon protease [Micromonas commoda] diamond 246 113 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas commoda
27006683 27006683 PRJNA1120203_P_NODE_86822_length_248_cov_0.880000_g85806_i0 PRJNA1120203 86822 248 0.88 2.1824 Cymbomonas tetramitiformis 36881 Plants Plants 89 9.21e-19   NR KAK3261439.1 36881 g85806 i0 54.1 1.02822580645161 85 34 96.8 1 8 247 112 196 KAK3261439.1 hypothetical protein CYMTET_29655 [Cymbomonas tetramitiformis] diamond 255 89 1 Eukaryota   Viridiplantae Chlorophyta Pyramimonadophyceae Pyramimonadales Pyramimonadaceae Cymbomonas Cymbomonas tetramitiformis
27386355 27386355 PRJNA1120203_P_NODE_79643_length_251_cov_0.865169_g78627_i0 PRJNA1120203 79643 251 0.865169 2.17157419 Bryopsis sp. KO-2 3115439 Plants Plants 55.5 9.19e-7   NR GMH42221.1 3041901 g78627 i0 77.1 0.836653386454183 35 8 41.8 0 119 223 131 165 GMH42221.1 hypothetical protein BSKO_10140 [Bryopsis sp. KO-2023] diamond 210 55.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Bryopsidaceae Bryopsis Bryopsis sp. KO-2023
27544088 27544088 PRJNA1120203_P_NODE_79264_length_251_cov_0.865169_g78248_i0 PRJNA1120203 79264 251 0.865169 2.17157419 Ostreococcus tauri 70448 Plants Plants 132 1.68e-33   NR XP_003078369.2 70448 g78248 i0 81.9 0.99203187250996006 83 15 99.2 0 2 250 241 323 XP_003078369.2 Helicase, C-terminal [Ostreococcus tauri] diamond 249 132 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Bathycoccaceae Ostreococcus Ostreococcus tauri
28491332 28491332 PRJNA1120203_P_NODE_92227_length_246_cov_0.890173_g91211_i0 PRJNA1120203 92227 246 0.890173 2.18982558 Picochlorum sp. BPE23 2696299 Plants Plants 58.2 1.42e-7   NR KAI8101610.1 2696299 g91211 i0 70.6 0.621951219512195 51 15 62.2 0 87 239 424 474 KAI8101610.1 hypothetical protein M9434_006677 [Picochlorum sp. BPE23] diamond 153 58.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Picochlorum Picochlorum sp. BPE23
28870051 28870051 PRJNA1120203_P_NODE_104488_length_241_cov_0.916667_g103472_i0 PRJNA1120203 104488 241 0.916667 2.20916747 Bathycoccus prasinos 41875 Plants Plants 115 7.18e-30   NR XP_007513957.1 41875 g103472 i0 78.5 0.983402489626556 79 16 98.3 1 239 3 26 103 XP_007513957.1 predicted protein [Bathycoccus prasinos] diamond 237 115 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Bathycoccaceae Bathycoccus Bathycoccus prasinos
29280444 29280444 PRJNA1120203_P_NODE_104929_length_241_cov_0.916667_g103913_i0 PRJNA1120203 104929 241 0.916667 2.20916747 Ostreococcus lucimarinus CCE99 242159 Plants Plants 63.9 1.24e-9   NR XP_001415474.1 436017 g103913 i0 80 0.435684647302905 35 7 43.6 0 115 11 41 75 XP_001415474.1 predicted protein [Ostreococcus lucimarinus CCE9901] diamond 105 63.9 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Bathycoccaceae Ostreococcus Ostreococcus sp. 'lucimarinus'
29501489 29501489 PRJNA1120203_P_NODE_105130_length_241_cov_0.916667_g104114_i0 PRJNA1120203 105130 241 0.916667 2.20916747 Bathycoccus prasinos 41875 Plants Plants 74.3 2.8e-13   NR XP_007510943.1 41875 g104114 i0 51.1 1.12033195020747 90 33 98.3 3 4 240 46 135 XP_007510943.1 predicted protein [Bathycoccus prasinos] diamond 270 74.3 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Bathycoccaceae Bathycoccus Bathycoccus prasinos
31955792 31955792 PRJNA1120203_P_NODE_87897_length_248_cov_0.880000_g86881_i0 PRJNA1120203 87897 248 0.88 2.1824 Opisthokonta 33154 Plants Plants 53.5 6.01e-6   NR WZN63018.1 1461544 g86881 i0 48.1 2.23790322580645 54 25 61.7 2 157 5 356 409 WZN63018.1 RING-type domain-containing protein [Chloropicon roscoffensis] diamond 555 53.5 1 Eukaryota   Viridiplantae Chlorophyta Chloropicophyceae Chloropicales Chloropicaceae Chloropicon Chloropicon roscoffensis
32840388 32840388 PRJNA1120203_P_NODE_102900_length_242_cov_0.911243_g101884_i0 PRJNA1120203 102900 242 0.911243 2.20520806 Scenedesmaceae 3086 Plants Plants 45.1 0.00546   NR WIA13712.1 3088 g101884 i0 84.6 1.93388429752066 26 4 32.2 0 2 79 17 42 WIA13712.1 hypothetical protein OEZ85_007265 [Tetradesmus obliquus] diamond 468 45.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;