RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1120203" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1120203 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1550150 1550150 PRJNA1120203_P_NODE_92882_length_246_cov_0.890173_g91866_i0 PRJNA1120203 92882 246 0.890173 2.18982558 Chlamydiae bacterium SM23_39 1704235 Bacteria Bacteria 115 5.8e-28   NR KPK33734.1 1704235 g91866 i0 61.5 1.9390243902439 78 30 95.1 0 10 243 48 125 KPK33734.1 MAG: hypothetical protein AMS24_00200 [Chlamydiae bacterium SM23_39] diamond 477 115 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiae bacterium SM23_39
26616093 26616093 PRJNA1120203_P_NODE_100961_length_243_cov_0.864706_g99945_i0 PRJNA1120203 100961 243 0.864706 2.10123558 Chlamydiia 204429 Bacteria Bacteria 142 2.45e-39   NR HSX13053.1 2047757 g99945 i0 75.9 1.95061728395062 79 19 97.5 0 1 237 228 306 HSX13053.1 putative lipopolysaccharide heptosyltransferase III [Chlamydiales bacterium] diamond 474 142 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
27059374 27059374 PRJNA1120203_P_NODE_68182_length_272_cov_1.402010_g67166_i0 PRJNA1120203 68182 272 1.40201 3.8134672 Bacteria 2 Bacteria Bacteria 99 6.88e-22   NR MBX7065772.1 2052178 g67166 i0 82 4.09191176470588 61 11 67.3 0 3 185 430 490 MBX7065772.1 NTP/NDP exchange transporter [Parachlamydiales bacterium] diamond 1113 99.4 0.995975855130785 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales     Parachlamydiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;