RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1120203" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJNA1120203 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14304474 14304474 PRJNA1120203_P_NODE_94672_length_245_cov_0.895349_g93656_i0 PRJNA1120203 94672 245 0.895349 2.19360505 Fusobacterium sp. oral taxon 2 68766 Bacteria Bacteria 120 1.28e-29   NR WP_094243087.1 671211 g93656 i0 69.5 1.00408163265306 82 19 93.1 1 2 229 227 308 WP_094243087.1 autotransporter-associated N-terminal domain-containing protein, partial [Fusobacterium sp. oral taxon 203] diamond 246 120 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp. oral taxon 203
16851832 16851832 PRJNA1120203_P_NODE_104274_length_241_cov_0.916667_g103258_i0 PRJNA1120203 104274 241 0.916667 2.20916747 Fusobacterium sp. 68766 Bacteria Bacteria 121 5.39e-32   NR WP_300453215.1 68766 g103258 i0 93.5 0.771784232365145 62 4 77.2 0 187 2 1 62 WP_300453215.1 amino acid ABC transporter substrate-binding protein [Fusobacterium sp.] diamond 186 121 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp.
28554571 28554571 PRJNA1120203_P_NODE_96607_length_244_cov_0.900585_g95591_i0 PRJNA1120203 96607 244 0.900585 2.1974274 Fusobacterium sp. 68766 Bacteria Bacteria 155 6.379999999999999e-43   NR WP_291254847.1 68766 g95591 i0 98.7 1.94262295081967 79 1 97.1 0 239 3 322 400 WP_291254847.1 RAMP superfamily CRISPR-associated protein [Fusobacterium sp.] diamond 474 155 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp.
31766052 31766052 PRJNA1120203_P_NODE_100917_length_243_cov_0.882353_g99901_i0 PRJNA1120203 100917 243 0.882353 2.14411779 Cyanobacteriota/Melainabacteria group 1798711 Bacteria Bacteria 155 1.24e-41   NR CDE92132.1 1262901 g99901 i0 97.5 2 81 2 100 0 1 243 22 102 CDE92132.1 chromosome partition protein Smc [Fusobacterium sp. CAG:815] diamond 486 155 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp. CAG:815

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;