RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1120203" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA1120203 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27386355 27386355 PRJNA1120203_P_NODE_79643_length_251_cov_0.865169_g78627_i0 PRJNA1120203 79643 251 0.865169 2.17157419 Bryopsis sp. KO-2 3115439 Plants Plants 55.5 9.19e-7   NR GMH42221.1 3041901 g78627 i0 77.1 0.836653386454183 35 8 41.8 0 119 223 131 165 GMH42221.1 hypothetical protein BSKO_10140 [Bryopsis sp. KO-2023] diamond 210 55.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Bryopsidaceae Bryopsis Bryopsis sp. KO-2023
28491332 28491332 PRJNA1120203_P_NODE_92227_length_246_cov_0.890173_g91211_i0 PRJNA1120203 92227 246 0.890173 2.18982558 Picochlorum sp. BPE23 2696299 Plants Plants 58.2 1.42e-7   NR KAI8101610.1 2696299 g91211 i0 70.6 0.621951219512195 51 15 62.2 0 87 239 424 474 KAI8101610.1 hypothetical protein M9434_006677 [Picochlorum sp. BPE23] diamond 153 58.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Picochlorum Picochlorum sp. BPE23
32840388 32840388 PRJNA1120203_P_NODE_102900_length_242_cov_0.911243_g101884_i0 PRJNA1120203 102900 242 0.911243 2.20520806 Scenedesmaceae 3086 Plants Plants 45.1 0.00546   NR WIA13712.1 3088 g101884 i0 84.6 1.93388429752066 26 4 32.2 0 2 79 17 42 WIA13712.1 hypothetical protein OEZ85_007265 [Tetradesmus obliquus] diamond 468 45.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;