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contig_metadata

22 rows where analysis = "diamond", bioproject = "PRJNA1120060" and tax_phylum = "Rhodophyta"

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tax_superkingdom 1

tax_phylum 1

  • Rhodophyta · 22 ✖

bioproject 1

  • PRJNA1120060 · 22 ✖

analysis 1

  • diamond · 22 ✖

tax_kingdom 0

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2811465 2811465 PRJNA1120060_P_NODE_324363_length_410_cov_7.077151_g307165_i0 PRJNA1120060 324363 410 7.077151 29.0163191 Pulvinaster venetus 427767 Rhodophyta other_Eukaryota 72.8 7.83e-12   NR YP_010337445.1 427767 g307165 i0 64.9 5.00487804878049 57 20 41.7 0 381 211 1038 1094 YP_010337445.1 ferredoxin-dependent glutamate synthase [Pulvinaster venetus] diamond 2052 72.8 1 Eukaryota     Rhodophyta Compsopogonophyceae Compsopogonales Compsopogonaceae Pulvinaster Pulvinaster venetus
11716992 11716992 PRJNA1120060_P_NODE_1467130_length_295_cov_2.130631_g1449145_i0 PRJNA1120060 1467130 295 2.130631 6.28536145 Cyanidioschyzon merolae strain 1 45157 Rhodophyta other_Eukaryota 124 1.7900000000000002e-33   NR XP_005538418.1 280699 g1449145 i0 58.9 2.93898305084746 95 39 96.6 0 11 295 6 100 XP_005538418.1 60S ribosomal protein L13A [Cyanidioschyzon merolae strain 10D] diamond 867 124 1 Eukaryota     Rhodophyta Bangiophyceae Cyanidiales Cyanidiaceae Cyanidioschyzon Cyanidioschyzon merolae
11730873 11730873 PRJNA1120060_P_NODE_2497250_length_254_cov_1.491713_g2479179_i0 PRJNA1120060 2497250 254 1.491713 3.78895102 Porphyridium purpureum 35688 Rhodophyta other_Eukaryota 132 4.99e-34   NR KAA8494403.1 35688 g2479179 i0 71.4 7.93700787401575 84 24 99.2 0 1 252 260 343 KAA8494403.1 Proline--tRNA ligase [Porphyridium purpureum] diamond 2016 132 1 Eukaryota     Rhodophyta Bangiophyceae Porphyridiales Porphyridiaceae Porphyridium Porphyridium purpureum
27153681 27153681 PRJNA1120060_P_NODE_406542_length_387_cov_3.038217_g389110_i0 PRJNA1120060 406542 387 3.038217 11.75789979 root 1 Root_unresolved Root_unresolved 66.6 7.85e-10   NR GJD07377.1 130081 g389110 i0 42.2 4.82945736434108 83 48 64.3 0 383 135 2 84 GJD07377.1 Alpha/beta hydrolase domain-containing protein 13 [Galdieria sulphuraria] diamond 1869 66.6 1 Eukaryota     Rhodophyta Bangiophyceae Galdieriales Galdieriaceae Galdieria Galdieria sulphuraria
27732500 27732500 PRJNA1120060_P_NODE_2102344_length_268_cov_5.928205_g2084300_i0 PRJNA1120060 2102344 268 5.928205 15.8875894 Polysiphonia sp. 1967842 Rhodophyta other_Eukaryota 58.9 4.37e-8   NR ARW69369.1 1967842 g2084300 i0 40.7 0.66044776119403 59 35 66 0 23 199 146 204 ARW69369.1 ribosomal protein S3 [Polysiphonia sp.] diamond 177 58.9 1 Eukaryota     Rhodophyta Florideophyceae Ceramiales Rhodomelaceae Polysiphonia Polysiphonia sp.
28080203 28080203 PRJNA1120060_P_NODE_3305705_length_226_cov_6.967320_g3287595_i0 PRJNA1120060 3305705 226 6.96732 15.7461432 Porphyridium purpureum 35688 Rhodophyta other_Eukaryota 53.9 9.46e-7   NR KAA8495398.1 35688 g3287595 i0 61.5 0.517699115044248 39 15 51.8 0 108 224 77 115 KAA8495398.1 SCF ubiquitin ligase complex protein SKP1a [Porphyridium purpureum] diamond 117 53.9 1 Eukaryota     Rhodophyta Bangiophyceae Porphyridiales Porphyridiaceae Porphyridium Porphyridium purpureum
28733072 28733072 PRJNA1120060_P_NODE_2582667_length_251_cov_2.803371_g2564590_i0 PRJNA1120060 2582667 251 2.803371 7.03646121 Viridiplantae 33090 Rhodophyta other_Eukaryota 45.1 0.0061   NR OSX69264.1 2786 g2564590 i0 45.6 3.35856573705179 57 29 65.7 2 165 1 105 161 OSX69264.1 hypothetical protein BU14_1681s0001 [Porphyra umbilicalis] diamond 843 45.4 0.993392070484582 Eukaryota     Rhodophyta Bangiophyceae Bangiales Bangiaceae Porphyra Porphyra umbilicalis
28868433 28868433 PRJNA1120060_P_NODE_1493868_length_293_cov_5.345455_g1475880_i0 PRJNA1120060 1493868 293 5.345455 15.66218315 Cyanidioschyzon merolae strain 1 45157 Rhodophyta other_Eukaryota 77 5.96e-14   NR XP_005534819.1 280699 g1475880 i0 38.3 2.35494880546075 115 53 99.3 2 3 293 330 444 XP_005534819.1 probable carbon catabolite repressor Ccr4p [Cyanidioschyzon merolae strain 10D] diamond 690 77 1 Eukaryota     Rhodophyta Bangiophyceae Cyanidiales Cyanidiaceae Cyanidioschyzon Cyanidioschyzon merolae
28954197 28954197 PRJNA1120060_P_NODE_2114808_length_268_cov_2.164103_g2096764_i0 PRJNA1120060 2114808 268 2.164103 5.79979604 Viridiplantae 33090 Rhodophyta other_Eukaryota 50.4 1.01e-4   NR OSX79137.1 2786 g2096764 i0 85.2 4.83582089552239 27 4 30.2 0 82 2 289 315 OSX79137.1 hypothetical protein BU14_0086s0024 [Porphyra umbilicalis] diamond 1296 50.4 1 Eukaryota     Rhodophyta Bangiophyceae Bangiales Bangiaceae Porphyra Porphyra umbilicalis
29048757 29048757 PRJNA1120060_P_NODE_1407108_length_297_cov_4.620536_g1389126_i0 PRJNA1120060 1407108 297 4.620536 13.72299192 root 1 Root_unresolved Root_unresolved 48.9 4.59e-4   NR YP_009739149.1 187399 g1389126 i0 69.7 7.72727272727273 33 10 33.3 0 29 127 347 379 YP_009739149.1 ABC transporter subunit [Palmaria decipiens] diamond 2295 48.9 1 Eukaryota     Rhodophyta Florideophyceae Palmariales Palmariaceae Palmaria Palmaria decipiens
29090682 29090682 PRJNA1120060_P_NODE_3052268_length_238_cov_3.406061_g3034167_i0 PRJNA1120060 3052268 238 3.406061 8.10642518 Chondrus crispus 2769 Rhodophyta other_Eukaryota 42.7 0.0362   NR XP_005711658.1 2769 g3034167 i0 37.1 0.781512605042017 62 27 69.3 2 180 16 140 196 XP_005711658.1 unnamed protein product [Chondrus crispus] diamond 186 42.7 1 Eukaryota     Rhodophyta Florideophyceae Gigartinales Gigartinaceae Chondrus Chondrus crispus
29406213 29406213 PRJNA1120060_P_NODE_3001029_length_241_cov_2.130952_g2982932_i0 PRJNA1120060 3001029 241 2.130952 5.13559432 Galdieria partita 83374 Rhodophyta other_Eukaryota 42.7 0.0361   NR GJQ09967.1 83374 g2982932 i0 44 0.622406639004149 50 26 62.2 1 170 21 132 179 GJQ09967.1 hypothetical protein GpartN1_g1758.t1 [Galdieria partita] diamond 150 42.7 1 Eukaryota     Rhodophyta Bangiophyceae Galdieriales Galdieriaceae Galdieria Galdieria partita
29563991 29563991 PRJNA1120060_P_NODE_2977890_length_242_cov_0.917160_g2959796_i0 PRJNA1120060 2977890 242 0.91716 2.2195272 Gracilaria domingensis 172961 Rhodophyta other_Eukaryota 75.1 1.43e-13   NR KAI0559022.1 172961 g2959796 i0 49.4 2.04545454545455 83 38 99.2 2 3 242 397 478 KAI0559022.1 serine hydroxymethyltransferase cytosolic (glycine hydroxymethyltransferase) [Gracilaria domingensis] diamond 495 75.1 1 Eukaryota     Rhodophyta Florideophyceae Gracilariales Gracilariaceae Gracilaria Gracilaria domingensis
29785215 29785215 PRJNA1120060_P_NODE_3271731_length_228_cov_3.109677_g3253623_i0 PRJNA1120060 3271731 228 3.109677 7.09006356 Pulvinaster venetus 427767 Rhodophyta other_Eukaryota 70.9 3.78e-12   NR YP_010337445.1 427767 g3253623 i0 69.2 8.21052631578947 52 16 68.4 0 8 163 1043 1094 YP_010337445.1 ferredoxin-dependent glutamate synthase [Pulvinaster venetus] diamond 1872 70.9 1 Eukaryota     Rhodophyta Compsopogonophyceae Compsopogonales Compsopogonaceae Pulvinaster Pulvinaster venetus
30069968 30069968 PRJNA1120060_P_NODE_950572_length_312_cov_3.154812_g932643_i0 PRJNA1120060 950572 312 3.154812 9.84301344 Dixoniella grisea 35153 Rhodophyta other_Eukaryota 45.8 0.00638   NR YP_010337608.1 35153 g932643 i0 33.3 0.576923076923077 60 39 57.7 1 240 61 26 84 YP_010337608.1 tRNA(Ile)-lysidine synthase [Dixoniella grisea] diamond 180 45.8 1 Eukaryota     Rhodophyta Bangiophyceae Porphyridiales Porphyridiaceae Dixoniella Dixoniella grisea
30258002 30258002 PRJNA1120060_P_NODE_1036932_length_311_cov_6.319328_g1018997_i0 PRJNA1120060 1036932 311 6.319328 19.65311008 Dictyomenia sonderi 2007178 Rhodophyta other_Eukaryota 44.3 0.0235   NR YP_010620229.1 2007178 g1018997 i0 37.5 0.540192926045016 56 35 54 0 268 101 22 77 YP_010620229.1 NADH dehydrogenase subunit 5 [Dictyomenia sonderi] diamond 168 44.3 1 Eukaryota     Rhodophyta Florideophyceae Ceramiales Rhodomelaceae Dictyomenia Dictyomenia sonderi
30511038 30511038 PRJNA1120060_P_NODE_2038913_length_271_cov_2.065657_g2020876_i0 PRJNA1120060 2038913 271 2.065657 5.59793047 Chondrus crispus 2769 Rhodophyta other_Eukaryota 51.6 2.46e-5   NR XP_005714500.1 2769 g2020876 i0 45.6 6.04428044280443 57 22 63.1 1 224 54 89 136 XP_005714500.1 unnamed protein product [Chondrus crispus] diamond 1638 51.6 1 Eukaryota     Rhodophyta Florideophyceae Gigartinales Gigartinaceae Chondrus Chondrus crispus
30596298 30596298 PRJNA1120060_P_NODE_986173_length_312_cov_2.711297_g968244_i0 PRJNA1120060 986173 312 2.711297 8.45924664 Viridiplantae 33090 Rhodophyta other_Eukaryota 54.3 7.67e-6   NR KAA8498184.1 35688 g968244 i0 44.7 3.63461538461538 47 26 45.2 0 147 7 853 899 KAA8498184.1 Transposon Ty3-I Gag-Pol polyprotein [Porphyridium purpureum] diamond 1134 54.3 1 Eukaryota     Rhodophyta Bangiophyceae Porphyridiales Porphyridiaceae Porphyridium Porphyridium purpureum
31142904 31142904 PRJNA1120060_P_NODE_2473675_length_255_cov_1.164835_g2455605_i0 PRJNA1120060 2473675 255 1.164835 2.97032925 Pyropia vietnamensis 683352 Rhodophyta other_Eukaryota 45.1 0.00658   NR GAB0492077.1 683352 g2455605 i0 47.1 0.6 51 24 56.5 1 103 246 83 133 GAB0492077.1 hypothetical protein MMPV_003336 [Pyropia vietnamensis] diamond 153 45.1 1 Eukaryota     Rhodophyta Bangiophyceae Bangiales Bangiaceae Pyropia Pyropia vietnamensis
31554402 31554402 PRJNA1120060_P_NODE_2145356_length_267_cov_1.649485_g2127310_i0 PRJNA1120060 2145356 267 1.649485 4.40412495 Gracilariopsis chorda 448386 Rhodophyta other_Eukaryota 43.9 0.0205   NR PXF45388.1 448386 g2127310 i0 36.8 0.853932584269663 76 40 78.7 2 213 4 128 201 PXF45388.1 Phospholipid-transporting ATPase IA [Gracilariopsis chorda] diamond 228 43.9 1 Eukaryota     Rhodophyta Florideophyceae Gracilariales Gracilariaceae Gracilariopsis Gracilariopsis chorda
32281576 32281576 PRJNA1120060_P_NODE_1448939_length_296_cov_1.049327_g1430955_i0 PRJNA1120060 1448939 296 1.049327 3.10600792 Porphyridium purpureum 35688 Rhodophyta other_Eukaryota 78.2 2.14e-14   NR KAA8499502.1 35688 g1430955 i0 41.4 1.99662162162162 99 57 99.3 1 2 295 105 203 KAA8499502.1 hypothetical protein FVE85_7087 [Porphyridium purpureum] diamond 591 78.2 1 Eukaryota     Rhodophyta Bangiophyceae Porphyridiales Porphyridiaceae Porphyridium Porphyridium purpureum
32281819 32281819 PRJNA1120060_P_NODE_1788219_length_281_cov_2.581731_g1770207_i0 PRJNA1120060 1788219 281 2.581731 7.25466411 Catenella fusiformis 3024791 Rhodophyta other_Eukaryota 44.7 0.00993   NR YP_011037894.1 3024791 g1770207 i0 35.7 0.747330960854093 70 43 74.7 1 48 257 36 103 YP_011037894.1 ribosomal protein S3 [Catenella fusiformis] diamond 210 44.7 1 Eukaryota     Rhodophyta Florideophyceae Gigartinales Caulacanthaceae Catenella Catenella fusiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;