RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1120060" and tax_phylum = "Candidatus Rifleibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Rifleibacteriota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1120060 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27005641 27005641 PRJNA1120060_P_NODE_2460022_length_255_cov_2.521978_g2441952_i0 PRJNA1120060 2460022 255 2.521978 6.4310439 Candidatus Rifleibacteriota bacterium 2053586 Bacteria Bacteria 43.9 0.0176   NR MBI4859092.1 2053586 g2441952 i0 30.6 1 85 56 97.6 2 249 1 89 172 MBI4859092.1 response regulator [Candidatus Rifleibacteriota bacterium] diamond 255 43.9 1 Bacteria Bacteria candidate phyla   Candidatus Rifleibacteriota         Candidatus Rifleibacteriota bacterium
29594490 29594490 PRJNA1120060_P_NODE_1789430_length_281_cov_2.399038_g1771418_i0 PRJNA1120060 1789430 281 2.399038 6.74129678 Candidatus Rifleibacterium amylolyticum 2760816 Bacteria Bacteria 44.3 0.0149   NR KAF1081965.1 2760816 g1771418 i0 34.9 1.30249110320285 63 41 67.3 0 20 208 19 81 KAF1081965.1 MAG: 5'-methylthioadenosine phosphorylase [Candidatus Rifleibacterium amylolyticum] diamond 366 44.3 1 Bacteria Bacteria candidate phyla   Candidatus Rifleibacteriota       Candidatus Rifleibacterium Candidatus Rifleibacterium amylolyticum
31523389 31523389 PRJNA1120060_P_NODE_3223476_length_230_cov_3.573248_g3205369_i0 PRJNA1120060 3223476 230 3.573248 8.2184704 Candidatus Rifleibacteriota bacterium 2053586 Bacteria Bacteria 84.3 3.25e-17   NR MBF0502333.1 2053586 g3205369 i0 93 0.560869565217391 43 3 56.1 0 100 228 1 43 MBF0502333.1 RNA 3'-terminal phosphate cyclase [Candidatus Rifleibacteriota bacterium] diamond 129 84.3 1 Bacteria Bacteria candidate phyla   Candidatus Rifleibacteriota         Candidatus Rifleibacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;