RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1120060" and tax_phylum = "Candidatus Methanomethylicota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Methanomethylicota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1120060 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27258251 27258251 PRJNA1120060_P_NODE_1718603_length_284_cov_2.213270_g1700597_i0 PRJNA1120060 1718603 284 2.21327 6.2856868 Candidatus Methanomethylicaceae archaeon 2282146 Archaea Archaea 56.2 1.12e-6   NR MEM2002060.1 3058293 g1700597 i0 53.8 5.83098591549296 52 24 54.9 0 117 272 570 621 MEM2002060.1 RNase H-like domain-containing protein [Candidatus Methanomethylicaceae archaeon] diamond 1656 56.2 1 Archaea   Thermoproteati Candidatus Methanomethylicota Candidatus Methanomethylicia Candidatus Methanomethylicales Candidatus Methanomethylicaceae   Candidatus Methanomethylicaceae archaeon
31680955 31680955 PRJNA1120060_P_NODE_2730137_length_248_cov_0.868571_g2712054_i0 PRJNA1120060 2730137 248 0.868571 2.15405608 Candidatus Methanomethylicaceae archaeon 2282146 Archaea Archaea 43.5 0.0199   NR MEM4202700.1 3058293 g2712054 i0 42.3 0.629032258064516 52 28 60.5 1 247 98 243 294 MEM4202700.1 class I SAM-dependent methyltransferase [Candidatus Methanomethylicaceae archaeon] diamond 156 43.5 1 Archaea   Thermoproteati Candidatus Methanomethylicota Candidatus Methanomethylicia Candidatus Methanomethylicales Candidatus Methanomethylicaceae   Candidatus Methanomethylicaceae archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;