RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1120060" and tax_phylum = "Candidatus Komeiliibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Komeiliibacteriota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1120060 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26911329 26911329 PRJNA1120060_P_NODE_3353702_length_221_cov_4.695946_g3335585_i0 PRJNA1120060 3353702 221 4.695946 10.37804066 Candidatus Komeilibacteria bacterium 2053566 Bacteria Bacteria 42.4 0.0171   NR MCR4279973.1 2053566 g3335585 i0 34.7 0.97737556561086 72 47 97.7 0 1 216 55 126 MCR4279973.1 ribonuclease HI family protein [Candidatus Komeilibacteria bacterium] diamond 216 42.4 1 Bacteria Bacteria candidate phyla   Candidatus Komeiliibacteriota         Candidatus Komeilibacteria bacterium
28322370 28322370 PRJNA1120060_P_NODE_1569666_length_290_cov_2.700461_g1551674_i0 PRJNA1120060 1569666 290 2.7004609999999998 7.8313369 Bacteria 2 Bacteria Bacteria 50.8 2.26e-5   NR OGY94261.1 1798555 g1551674 i0 40.6 2.9172413793103402 69 41 71.4 0 24 230 60 128 OGY94261.1 MAG: hypothetical protein A2406_02060 [Candidatus Komeilibacteria bacterium RIFOXYC1_FULL_37_11] diamond 846 50.8 1 Bacteria Bacteria candidate phyla   Candidatus Komeiliibacteriota         Candidatus Komeilibacteria bacterium RIFOXYC1_FULL_37_11
29278743 29278743 PRJNA1120060_P_NODE_1462989_length_295_cov_2.806306_g1445004_i0 PRJNA1120060 1462989 295 2.806306 8.2786027 Candidatus Komeilibacteria bacterium RIFOXYC1_FULL_37_11 1798555 Bacteria Bacteria 47.8 3.62e-4   NR OGY94261.1 1798555 g1445004 i0 36 1.51525423728814 75 48 76.3 0 225 1 60 134 OGY94261.1 MAG: hypothetical protein A2406_02060 [Candidatus Komeilibacteria bacterium RIFOXYC1_FULL_37_11] diamond 447 47.8 1 Bacteria Bacteria candidate phyla   Candidatus Komeiliibacteriota         Candidatus Komeilibacteria bacterium RIFOXYC1_FULL_37_11

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;