RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

1 row where analysis = "diamond", bioproject = "PRJNA1120060" and tax_phylum = "Candidatus Harrisoniibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Harrisoniibacteriota · 1 ✖

tax_clade 1

bioproject 1

  • PRJNA1120060 · 1 ✖

analysis 1

  • diamond · 1 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30375591 30375591 PRJNA1120060_P_NODE_2436592_length_256_cov_2.038251_g2418523_i0 PRJNA1120060 2436592 256 2.038251 5.21792256 Fusobacteriati 3384189 Bacteria Bacteria 46.6 0.00133   NR OGY64462.1 1798404 g2418523 i0 39 1.3828125 59 34 69.1 1 187 11 115 171 OGY64462.1 MAG: hypothetical protein A3B92_02480 [Candidatus Harrisonbacteria bacterium RIFCSPHIGHO2_02_FULL_42_16] diamond 354 46.6 1 Bacteria Bacteria candidate phyla   Candidatus Harrisoniibacteriota         Candidatus Harrisonbacteria bacterium RIFCSPHIGHO2_02_FULL_42_16

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;