RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "diamond", bioproject = "PRJNA1120060" and tax_phylum = "Candidatus Goldiibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Goldiibacteriota · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA1120060 · 8 ✖

analysis 1

  • diamond · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27921157 27921157 PRJNA1120060_P_NODE_1495505_length_293_cov_4.331818_g1477517_i0 PRJNA1120060 1495505 293 4.331818 12.69222674 Candidatus Goldiibacteriota bacterium 2725315 Bacteria Bacteria 54.7 7.49e-7   NR MCX7697896.1 2725315 g1477517 i0 37.3 2.66211604095563 83 50 82.9 1 247 5 8 90 MCX7697896.1 ribonuclease HI family protein [Candidatus Goldiibacteriota bacterium] diamond 780 54.7 1 Bacteria Bacteria candidate phyla   Candidatus Goldiibacteriota         Candidatus Goldiibacteriota bacterium
30447816 30447816 PRJNA1120060_P_NODE_1655293_length_287_cov_1.242991_g1637295_i0 PRJNA1120060 1655293 287 1.242991 3.56738417 Candidatus Goldiibacteriota bacterium 2725315 Bacteria Bacteria 47 6.28e-4   NR MCX7697896.1 2725315 g1637295 i0 41.2 2.14285714285714 68 38 69 1 78 275 8 75 MCX7697896.1 ribonuclease HI family protein [Candidatus Goldiibacteriota bacterium] diamond 615 47 1 Bacteria Bacteria candidate phyla   Candidatus Goldiibacteriota         Candidatus Goldiibacteriota bacterium
30954172 30954172 PRJNA1120060_P_NODE_2882034_length_244_cov_1.473684_g2863945_i0 PRJNA1120060 2882034 244 1.473684 3.59578896 Candidatus Goldiibacteriota bacterium 2725315 Bacteria Bacteria 48.1 1.43e-4   NR MCX7697896.1 2725315 g2863945 i0 44.8 0.713114754098361 58 30 68.9 1 172 5 8 65 MCX7697896.1 ribonuclease HI family protein [Candidatus Goldiibacteriota bacterium] diamond 174 48.1 1 Bacteria Bacteria candidate phyla   Candidatus Goldiibacteriota         Candidatus Goldiibacteriota bacterium
31175343 31175343 PRJNA1120060_P_NODE_469455_length_373_cov_1.403333_g451891_i0 PRJNA1120060 469455 373 1.403333 5.23443209 Candidatus Goldiibacteriota bacterium 2725315 Bacteria Bacteria 77.4 2.75e-15   NR MCX7697896.1 2725315 g451891 i0 39.7 7.54423592493298 121 70 95.7 2 3 359 9 128 MCX7697896.1 ribonuclease HI family protein [Candidatus Goldiibacteriota bacterium] diamond 2814 77.4 1 Bacteria Bacteria candidate phyla   Candidatus Goldiibacteriota         Candidatus Goldiibacteriota bacterium
31269857 31269857 PRJNA1120060_P_NODE_2571255_length_252_cov_0.821229_g2553180_i0 PRJNA1120060 2571255 252 0.821229 2.06949708 Candidatus Goldiibacteriota bacterium 2725315 Bacteria Bacteria 47.8 2.15e-4   NR MCX7697896.1 2725315 g2553180 i0 41.2 2.51190476190476 68 38 78.6 1 51 248 8 75 MCX7697896.1 ribonuclease HI family protein [Candidatus Goldiibacteriota bacterium] diamond 633 47.8 1 Bacteria Bacteria candidate phyla   Candidatus Goldiibacteriota         Candidatus Goldiibacteriota bacterium
31523670 31523670 PRJNA1120060_P_NODE_523376_length_362_cov_2.342561_g505739_i0 PRJNA1120060 523376 362 2.342561 8.48007082 Candidatus Goldiibacteriota bacterium 2725315 Bacteria Bacteria 48.9 2.59e-4   NR HRU38914.1 2725315 g505739 i0 42.9 0.464088397790055 56 32 46.4 0 192 359 73 128 HRU38914.1 ribonuclease HI family protein [Candidatus Goldiibacteriota bacterium] diamond 168 48.9 1 Bacteria Bacteria candidate phyla   Candidatus Goldiibacteriota         Candidatus Goldiibacteriota bacterium
32440986 32440986 PRJNA1120060_P_NODE_3184259_length_232_cov_2.849057_g3166153_i0 PRJNA1120060 3184259 232 2.849057 6.60981224 Candidatus Goldiibacteriota bacterium 2725315 Bacteria Bacteria 42.7 0.0143   NR MCX8094430.1 2725315 g3166153 i0 48.8 1.18965517241379 43 21 54.3 1 131 6 9 51 MCX8094430.1 ribonuclease HI family protein [Candidatus Goldiibacteriota bacterium] diamond 276 42.7 1 Bacteria Bacteria candidate phyla   Candidatus Goldiibacteriota         Candidatus Goldiibacteriota bacterium
32725081 32725081 PRJNA1120060_P_NODE_63240_length_660_cov_2.630324_g50730_i0 PRJNA1120060 63240 660 2.630324 17.3601384 Candidatus Goldiibacteriota bacterium 2725315 Bacteria Bacteria 75.5 2.14e-13   NR MCX7697896.1 2725315 g50730 i0 40.8 2.20454545454545 120 68 53.6 2 154 507 9 127 MCX7697896.1 ribonuclease HI family protein [Candidatus Goldiibacteriota bacterium] diamond 1455 75.5 1 Bacteria Bacteria candidate phyla   Candidatus Goldiibacteriota         Candidatus Goldiibacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;