RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1120060" and tax_phylum = "Candidatus Elulimicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Elulimicrobiota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1120060 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27796144 27796144 PRJNA1120060_P_NODE_2941984_length_242_cov_5.621302_g2923890_i0 PRJNA1120060 2941984 242 5.621302 13.60355084 Candidatus Elulimicrobium humile 2802965 Bacteria Bacteria 117 1.11e-28   NR NBP56732.1 2802965 g2923890 i0 92.3 0.805785123966942 65 5 80.6 0 196 2 92 156 NBP56732.1 hypothetical protein [Candidatus Elulimicrobium humile] diamond 195 117 1 Bacteria Bacteria candidate phyla   Candidatus Elulimicrobiota Candidatus Elulimicrobia Candidatus Elulimicrobiales Candidatus Elulimicrobiaceae Candidatus Elulimicrobium Candidatus Elulimicrobium humile
29437096 29437096 PRJNA1120060_P_NODE_2482830_length_254_cov_3.331492_g2464759_i0 PRJNA1120060 2482830 254 3.331492 8.46198968 Candidatus Elulimicrobium humile 2802965 Bacteria Bacteria 42.7 0.0419   NR NBP56835.1 2802965 g2464759 i0 38.8 0.791338582677165 67 25 63.8 2 172 11 147 210 NBP56835.1 hypothetical protein [Candidatus Elulimicrobium humile] diamond 201 42.7 1 Bacteria Bacteria candidate phyla   Candidatus Elulimicrobiota Candidatus Elulimicrobia Candidatus Elulimicrobiales Candidatus Elulimicrobiaceae Candidatus Elulimicrobium Candidatus Elulimicrobium humile
32692237 32692237 PRJNA1120060_P_NODE_1873920_length_278_cov_1.195122_g1855904_i0 PRJNA1120060 1873920 278 1.195122 3.32243916 Candidatus Elulimicrobium humile 2802965 Bacteria Bacteria 58.2 3.52e-8   NR NBP58330.1 2802965 g1855904 i0 71.4 0.377697841726619 35 10 37.8 0 1 105 111 145 NBP58330.1 N-acetyltransferase [Candidatus Elulimicrobium humile] diamond 105 58.2 1 Bacteria Bacteria candidate phyla   Candidatus Elulimicrobiota Candidatus Elulimicrobia Candidatus Elulimicrobiales Candidatus Elulimicrobiaceae Candidatus Elulimicrobium Candidatus Elulimicrobium humile

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;