RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1120060" and tax_phylum = "Candidatus Auribacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Auribacterota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1120060 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28016307 28016307 PRJNA1120060_P_NODE_1811925_length_280_cov_2.657005_g1793911_i0 PRJNA1120060 1811925 280 2.657005 7.439614 Candidatus Theseobacter exili 3039698 Bacteria Bacteria 43.9 0.0234   NR MDP8219011.1 3039698 g1793911 i0 34.4 0.653571428571429 61 39 65.4 1 96 278 1579 1638 MDP8219011.1 AAA family ATPase [Candidatus Theseobacter exili] diamond 183 43.9 1 Bacteria PVC group Pseudomonadati Candidatus Auribacterota Candidatus Auribacteria Candidatus Theseobacterales Candidatus Theseobacteraceae Candidatus Theseobacter Candidatus Theseobacter exili
32408372 32408372 PRJNA1120060_P_NODE_2057979_length_270_cov_3.015228_g2039942_i0 PRJNA1120060 2057979 270 3.015228 8.1411156 Candidatus Auribacterota bacterium 2093365 Bacteria Bacteria 43.5 0.0265   NR MCX6338506.1 2093365 g2039942 i0 38.5 0.577777777777778 52 29 57.8 1 195 40 248 296 MCX6338506.1 RluA family pseudouridine synthase [Candidatus Auribacterota bacterium] diamond 156 43.5 1 Bacteria PVC group Pseudomonadati Candidatus Auribacterota         Candidatus Auribacterota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;